BBOV_III009200 | proteasome A-type and B-type family protein

_IDPredictionOTHERSPmTPCS_Position
BBOV_III009200OTHER0.9999680.0000190.000013
No Results

  • Fasta :-

    >BBOV_III009200 MSYDRAITVFSPDGHLMQVEYAMETVKKGGCVVGVKGVDNVVLAAERKTTTKLQIPRSSK KILQLDDNMAVAFAGLNADARVLINKTRLECQRYRLNADEVASVGYIAKYIARLQQKYTH RGGVRLFGVALLIIGYDSNGKPGLYQTEPSGIHSSWKAQSIGRGSKSAQEFLEINYKEGM NVEESVTLSIKALVEVMEVSAKNIEVAILGPTGLQILDEEAISHVLKNINEAKAAQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_III009200.fa Sequence name : BBOV_III009200 Sequence length : 236 VALUES OF COMPUTED PARAMETERS Coef20 : 3.580 CoefTot : -0.045 ChDiff : 3 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.441 1.329 0.061 0.513 MesoH : -0.939 0.190 -0.500 0.160 MuHd_075 : 28.801 14.474 6.311 4.418 MuHd_095 : 12.302 7.855 2.787 2.606 MuHd_100 : 14.691 12.725 4.817 4.256 MuHd_105 : 16.058 16.131 5.922 5.689 Hmax_075 : 13.387 9.363 1.308 3.640 Hmax_095 : 7.525 4.375 -0.313 3.124 Hmax_100 : 8.000 10.200 -0.239 3.750 Hmax_105 : 4.200 9.700 -0.515 4.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9275 0.0725 DFMC : 0.9441 0.0559
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 236 BBOV_III009200 MSYDRAITVFSPDGHLMQVEYAMETVKKGGCVVGVKGVDNVVLAAERKTTTKLQIPRSSKKILQLDDNMAVAFAGLNADA 80 RVLINKTRLECQRYRLNADEVASVGYIAKYIARLQQKYTHRGGVRLFGVALLIIGYDSNGKPGLYQTEPSGIHSSWKAQS 160 IGRGSKSAQEFLEINYKEGMNVEESVTLSIKALVEVMEVSAKNIEVAILGPTGLQILDEEAISHVLKNINEAKAAQ 240 ................................................................................ 80 ................................................................................ 160 ............................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_III009200 5 --MSYDR|AI 0.082 . BBOV_III009200 27 YAMETVK|KG 0.065 . BBOV_III009200 28 AMETVKK|GG 0.112 . BBOV_III009200 36 GCVVGVK|GV 0.080 . BBOV_III009200 47 VVLAAER|KT 0.076 . BBOV_III009200 48 VLAAERK|TT 0.086 . BBOV_III009200 52 ERKTTTK|LQ 0.059 . BBOV_III009200 57 TKLQIPR|SS 0.148 . BBOV_III009200 60 QIPRSSK|KI 0.118 . BBOV_III009200 61 IPRSSKK|IL 0.103 . BBOV_III009200 81 GLNADAR|VL 0.101 . BBOV_III009200 86 ARVLINK|TR 0.058 . BBOV_III009200 88 VLINKTR|LE 0.081 . BBOV_III009200 93 TRLECQR|YR 0.087 . BBOV_III009200 95 LECQRYR|LN 0.091 . BBOV_III009200 109 SVGYIAK|YI 0.071 . BBOV_III009200 113 IAKYIAR|LQ 0.089 . BBOV_III009200 117 IARLQQK|YT 0.087 . BBOV_III009200 121 QQKYTHR|GG 0.085 . BBOV_III009200 125 THRGGVR|LF 0.108 . BBOV_III009200 141 GYDSNGK|PG 0.052 . BBOV_III009200 157 GIHSSWK|AQ 0.097 . BBOV_III009200 163 KAQSIGR|GS 0.096 . BBOV_III009200 166 SIGRGSK|SA 0.234 . BBOV_III009200 177 FLEINYK|EG 0.064 . BBOV_III009200 191 SVTLSIK|AL 0.063 . BBOV_III009200 202 VMEVSAK|NI 0.076 . BBOV_III009200 227 AISHVLK|NI 0.080 . BBOV_III009200 233 KNINEAK|AA 0.085 . ____________________________^_________________

  • Fasta :-

    >BBOV_III009200 AACAAGATGAGTTACGATCGCGCTATTACTGTATTTAGCCCTGATGGGCACTTGATGCAA GTGGAGTATGCCATGGAAACGGTAAAGAAGGGCGGTTGTGTAGTTGGCGTCAAGGGTGTA GATAATGTAGTCCTAGCAGCTGAACGCAAGACTACAACCAAATTGCAAATTCCAAGAAGC TCCAAAAAAATATTACAGCTAGATGATAATATGGCAGTAGCCTTCGCAGGACTTAACGCA GACGCAAGAGTACTCATCAATAAGACAAGACTTGAATGTCAGAGGTATCGTCTAAACGCT GACGAGGTGGCGTCAGTGGGATATATTGCAAAGTACATCGCAAGACTCCAACAGAAATAC ACACATAGAGGCGGAGTACGCTTATTCGGAGTGGCGCTGCTAATAATTGGATATGACTCC AATGGCAAACCTGGTCTATACCAAACTGAGCCCTCGGGAATACATTCCTCGTGGAAGGCA CAGTCTATCGGAAGAGGGTCAAAGAGCGCGCAAGAGTTTTTAGAGATCAATTATAAAGAG GGTATGAACGTGGAAGAAAGCGTAACGCTATCCATCAAGGCACTCGTAGAGGTCATGGAA GTGTCAGCCAAGAACATAGAAGTTGCGATACTAGGACCAACGGGATTGCAAATACTCGAT GAAGAGGCAATTTCACATGTTCTCAAGAATATTAACGAAGCTAAAGCTGCTCAGTGATTA CGTCTTTTCTATCACTACTTGGTGTCTCAACTGATATTGGTTGGACATGCATTAAGCCGC TTTCGTGAACTCATCAACAGCAAACTAACGCTCCATATAATGTAATAA
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  • Fasta :-

    MSYDRAITVFSPDGHLMQVEYAMETVKKGGCVVGVKGVDNVVLAAERKTTTKLQIPRSSK KILQLDDNMAVAFAGLNADARVLINKTRLECQRYRLNADEVASVGYIAKYIARLQQKYTH RGGVRLFGVALLIIGYDSNGKPGLYQTEPSGIHSSWKAQSIGRGSKSAQEFLEINYKEGM NVEESVTLSIKALVEVMEVSAKNIEVAILGPTGLQILDEEAISHVLKNINEAKAAQ

  • title: active site
  • coordinates: G30,E46,K48,K61
No Results
No Results
IDSitePeptideScoreMethod
BBOV_III009200165 SIGRGSKSAQ0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India