BBOV_III010630 | ubiquitin carboxyl-terminal hydrolase, family 1 protein

_IDPredictionOTHERSPmTPCS_Position
BBOV_III010630OTHER0.9576270.0005670.041806
No Results

  • Fasta :-

    >BBOV_III010630 MVSKLLRKFNKLQIQGVRNMRGDFAPLEACPEVFNNYAEKLGQSNVVFQDLLAWEDWAYN ELTKPVVGVIVTIPLTPKVIKYLVLDNVSQICRYRDTDAKYTSPKNVSAKVWFARQNLRN TCGTVALLHLLNNIEDDASVNEDSILEQMRKQSLKASPAERGALIEKTDKIKDLHTSFES QGQSAYNSDDVDTICHYITFVIVDDDLYELVGTMSSVKYTTQDGTLRFPVNHGRTEPKDL LRRVEKVVQGSIFALEPDNLQCAAIVASIKPDNEE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_III010630.fa Sequence name : BBOV_III010630 Sequence length : 275 VALUES OF COMPUTED PARAMETERS Coef20 : 4.292 CoefTot : -0.534 ChDiff : -6 ZoneTo : 22 KR : 6 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.694 1.647 0.013 0.547 MesoH : -0.857 0.251 -0.465 0.223 MuHd_075 : 20.141 9.100 4.871 4.476 MuHd_095 : 49.127 30.999 13.552 11.463 MuHd_100 : 56.741 28.703 13.839 12.094 MuHd_105 : 55.505 21.878 12.986 11.412 Hmax_075 : 4.783 8.167 -4.168 3.162 Hmax_095 : 12.200 14.900 1.461 5.230 Hmax_100 : 12.400 14.900 1.461 4.770 Hmax_105 : 9.683 12.017 0.546 4.900 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1388 0.8612 DFMC : 0.3496 0.6504 This protein is probably imported in mitochondria. f(Ser) = 0.0455 f(Arg) = 0.1364 CMi = 0.17422 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 275 BBOV_III010630 MVSKLLRKFNKLQIQGVRNMRGDFAPLEACPEVFNNYAEKLGQSNVVFQDLLAWEDWAYNELTKPVVGVIVTIPLTPKVI 80 KYLVLDNVSQICRYRDTDAKYTSPKNVSAKVWFARQNLRNTCGTVALLHLLNNIEDDASVNEDSILEQMRKQSLKASPAE 160 RGALIEKTDKIKDLHTSFESQGQSAYNSDDVDTICHYITFVIVDDDLYELVGTMSSVKYTTQDGTLRFPVNHGRTEPKDL 240 LRRVEKVVQGSIFALEPDNLQCAAIVASIKPDNEE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_III010630 4 ---MVSK|LL 0.062 . BBOV_III010630 7 MVSKLLR|KF 0.104 . BBOV_III010630 8 VSKLLRK|FN 0.084 . BBOV_III010630 11 LLRKFNK|LQ 0.083 . BBOV_III010630 18 LQIQGVR|NM 0.073 . BBOV_III010630 21 QGVRNMR|GD 0.211 . BBOV_III010630 40 FNNYAEK|LG 0.063 . BBOV_III010630 64 AYNELTK|PV 0.086 . BBOV_III010630 78 TIPLTPK|VI 0.057 . BBOV_III010630 81 LTPKVIK|YL 0.062 . BBOV_III010630 93 NVSQICR|YR 0.093 . BBOV_III010630 95 SQICRYR|DT 0.169 . BBOV_III010630 100 YRDTDAK|YT 0.084 . BBOV_III010630 105 AKYTSPK|NV 0.106 . BBOV_III010630 110 PKNVSAK|VW 0.088 . BBOV_III010630 115 AKVWFAR|QN 0.104 . BBOV_III010630 119 FARQNLR|NT 0.084 . BBOV_III010630 150 SILEQMR|KQ 0.078 . BBOV_III010630 151 ILEQMRK|QS 0.079 . BBOV_III010630 155 MRKQSLK|AS 0.081 . BBOV_III010630 161 KASPAER|GA 0.127 . BBOV_III010630 167 RGALIEK|TD 0.058 . BBOV_III010630 170 LIEKTDK|IK 0.058 . BBOV_III010630 172 EKTDKIK|DL 0.087 . BBOV_III010630 218 GTMSSVK|YT 0.071 . BBOV_III010630 227 TQDGTLR|FP 0.089 . BBOV_III010630 234 FPVNHGR|TE 0.079 . BBOV_III010630 238 HGRTEPK|DL 0.076 . BBOV_III010630 242 EPKDLLR|RV 0.140 . BBOV_III010630 243 PKDLLRR|VE 0.097 . BBOV_III010630 246 LLRRVEK|VV 0.242 . BBOV_III010630 270 AIVASIK|PD 0.063 . ____________________________^_________________

  • Fasta :-

    >BBOV_III010630 ATGGTATCTAAGCTTCTAAGGAAATTCAATAAACTGCAAATCCAAGGCGTACGTAACATG AGAGGTGACTTCGCTCCCCTTGAGGCTTGCCCTGAAGTTTTCAACAACTATGCGGAGAAA TTAGGGCAAAGCAATGTAGTATTTCAGGATTTGCTAGCATGGGAAGATTGGGCATACAAT GAGCTTACGAAGCCTGTAGTTGGTGTTATTGTGACCATCCCGCTCACACCAAAGGTAATA AAGTACCTGGTGTTAGATAACGTTTCACAGATATGCCGTTATCGCGATACTGATGCTAAA TATACATCACCGAAAAATGTGTCAGCAAAAGTCTGGTTTGCAAGACAGAATCTACGGAAC ACATGTGGAACTGTGGCTTTGTTACATTTGCTTAACAATATCGAGGATGATGCAAGCGTG AATGAAGATTCTATCCTTGAACAAATGAGGAAGCAATCGCTGAAGGCTTCACCTGCCGAA AGAGGAGCACTGATTGAAAAGACCGATAAGATCAAAGATCTACATACATCATTTGAATCA CAAGGACAATCAGCATACAATTCCGACGATGTAGATACCATCTGCCACTACATTACTTTT GTTATCGTCGATGATGACCTTTACGAACTGGTAGGTACAATGTCGTCAGTTAAATATACA ACACAGGATGGAACACTCAGGTTTCCCGTGAACCACGGAAGAACTGAGCCCAAGGACTTG CTTAGGCGAGTAGAGAAGGTTGTACAAGGGAGTATATTCGCATTGGAGCCAGATAATCTA CAGTGTGCTGCCATTGTGGCGTCAATCAAGCCGGACAATGAAGAGTGA
  • Download Fasta

  • Fasta :-

    MVSKLLRKFNKLQIQGVRNMRGDFAPLEACPEVFNNYAEKLGQSNVVFQDLLAWEDWAYN ELTKPVVGVIVTIPLTPKVIKYLVLDNVSQICRYRDTDAKYTSPKNVSAKVWFARQNLRN TCGTVALLHLLNNIEDDASVNEDSILEQMRKQSLKASPAERGALIEKTDKIKDLHTSFES QGQSAYNSDDVDTICHYITFVIVDDDLYELVGTMSSVKYTTQDGTLRFPVNHGRTEPKDL LRRVEKVVQGSIFALEPDNLQCAAIVASIKPDNEE

  • title: catalytic site
  • coordinates: Q116,C122,H196,D223
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
BBOV_III010630103 SAKYTSPKNV0.995unspBBOV_III010630153 SMRKQSLKAS0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India