BBOV_IV000300 | Der1-like family, putative

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_IDPredictionOTHERSPmTPCS_Position
BBOV_IV000300OTHER0.9980540.0009360.001010
No Results

  • Fasta :-

    >BBOV_IV000300 MSAKGSLYNLATIPTKPMLQCNGVPPKDSSLSLDNDEPKWSLSSLLDSREHWWLSRYVKA IKRLPPVTSSYITLSTIMALLSWGFNDNYPLEILQFDLKSFKSGKIWRILTPFLNFGQLW LAHIFMAQSVALYMASVEVSHCAKPEKFLEFMTFGTMCISLYGLADSLFGKQENTMGSAA YHLHTYVLYYWSRLNEGTVVNCFDLFNLPAEMVPFIFVLQNYLLYKEIYATDIAAIAAAH FYFYNLSNTKAIWPFSLLRKIGFKKLYERFNNEISR
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_IV000300.fa Sequence name : BBOV_IV000300 Sequence length : 276 VALUES OF COMPUTED PARAMETERS Coef20 : 3.799 CoefTot : -1.559 ChDiff : 4 ZoneTo : 27 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.782 1.500 0.200 0.634 MesoH : 0.322 0.662 -0.225 0.368 MuHd_075 : 18.724 15.786 5.173 4.895 MuHd_095 : 27.045 19.449 8.769 5.507 MuHd_100 : 19.729 15.406 6.827 4.008 MuHd_105 : 20.261 16.297 7.442 4.631 Hmax_075 : 14.817 14.467 2.520 5.647 Hmax_095 : 14.000 12.775 2.885 4.594 Hmax_100 : 10.200 15.600 3.842 4.320 Hmax_105 : 10.100 10.800 1.912 4.450 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2949 0.7051 DFMC : 0.3692 0.6308 This protein is probably imported in chloroplast. f(Ser) = 0.0741 f(Arg) = 0.0000 CMi = 1.05820 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 276 BBOV_IV000300 MSAKGSLYNLATIPTKPMLQCNGVPPKDSSLSLDNDEPKWSLSSLLDSREHWWLSRYVKAIKRLPPVTSSYITLSTIMAL 80 LSWGFNDNYPLEILQFDLKSFKSGKIWRILTPFLNFGQLWLAHIFMAQSVALYMASVEVSHCAKPEKFLEFMTFGTMCIS 160 LYGLADSLFGKQENTMGSAAYHLHTYVLYYWSRLNEGTVVNCFDLFNLPAEMVPFIFVLQNYLLYKEIYATDIAAIAAAH 240 FYFYNLSNTKAIWPFSLLRKIGFKKLYERFNNEISR 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_IV000300 4 ---MSAK|GS 0.073 . BBOV_IV000300 16 LATIPTK|PM 0.060 . BBOV_IV000300 27 CNGVPPK|DS 0.089 . BBOV_IV000300 39 LDNDEPK|WS 0.070 . BBOV_IV000300 49 SSLLDSR|EH 0.066 . BBOV_IV000300 56 EHWWLSR|YV 0.121 . BBOV_IV000300 59 WLSRYVK|AI 0.194 . BBOV_IV000300 62 RYVKAIK|RL 0.061 . BBOV_IV000300 63 YVKAIKR|LP 0.085 . BBOV_IV000300 99 ILQFDLK|SF 0.072 . BBOV_IV000300 102 FDLKSFK|SG 0.067 . BBOV_IV000300 105 KSFKSGK|IW 0.073 . BBOV_IV000300 108 KSGKIWR|IL 0.119 . BBOV_IV000300 144 EVSHCAK|PE 0.069 . BBOV_IV000300 147 HCAKPEK|FL 0.083 . BBOV_IV000300 171 ADSLFGK|QE 0.074 . BBOV_IV000300 193 VLYYWSR|LN 0.083 . BBOV_IV000300 226 QNYLLYK|EI 0.065 . BBOV_IV000300 250 YNLSNTK|AI 0.057 . BBOV_IV000300 259 WPFSLLR|KI 0.089 . BBOV_IV000300 260 PFSLLRK|IG 0.089 . BBOV_IV000300 264 LRKIGFK|KL 0.067 . BBOV_IV000300 265 RKIGFKK|LY 0.102 . BBOV_IV000300 269 FKKLYER|FN 0.088 . BBOV_IV000300 276 FNNEISR|-- 0.102 . ____________________________^_________________

  • Fasta :-

    >BBOV_IV000300 ATGTCCGCCAAAGGGAGCTTGTACAACCTGGCTACCATACCTACGAAACCAATGCTACAG TGTAATGGAGTACCGCCAAAGGATTCTTCATTGAGCTTAGACAACGACGAACCTAAGTGG AGCCTAAGTTCATTATTGGACTCAAGAGAACACTGGTGGTTATCTCGCTATGTGAAAGCG ATCAAAAGATTGCCACCAGTCACTTCGAGCTATATCACACTATCTACGATTATGGCACTA TTGTCCTGGGGGTTCAACGATAATTATCCGTTGGAAATATTACAATTCGACCTTAAATCC TTTAAAAGCGGTAAGATATGGAGAATATTAACTCCGTTTCTCAACTTCGGACAACTTTGG CTGGCCCATATCTTTATGGCACAGTCCGTGGCATTGTATATGGCGTCTGTAGAGGTTTCA CATTGCGCAAAGCCTGAGAAATTTCTTGAATTTATGACTTTCGGTACCATGTGCATATCA CTCTATGGGCTTGCTGATTCTTTGTTTGGTAAGCAGGAGAATACAATGGGAAGCGCGGCG TATCATCTTCATACGTATGTGTTATACTACTGGAGCCGTCTAAATGAAGGGACCGTAGTG AACTGCTTTGATTTATTCAATCTGCCCGCCGAGATGGTTCCCTTTATATTTGTCTTGCAA AACTATCTCCTCTACAAAGAGATTTACGCAACGGATATAGCTGCTATTGCTGCAGCCCAT TTTTACTTCTACAACCTCTCCAATACGAAGGCAATATGGCCTTTTTCACTACTACGGAAA ATAGGTTTCAAAAAGCTCTACGAGCGATTTAACAATGAAATATCTCGTTAA
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  • Fasta :-

    MSAKGSLYNLATIPTKPMLQCNGVPPKDSSLSLDNDEPKWSLSSLLDSREHWWLSRYVKA IKRLPPVTSSYITLSTIMALLSWGFNDNYPLEILQFDLKSFKSGKIWRILTPFLNFGQLW LAHIFMAQSVALYMASVEVSHCAKPEKFLEFMTFGTMCISLYGLADSLFGKQENTMGSAA YHLHTYVLYYWSRLNEGTVVNCFDLFNLPAEMVPFIFVLQNYLLYKEIYATDIAAIAAAH FYFYNLSNTKAIWPFSLLRKIGFKKLYERFNNEISR

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India