BBOV_IV002060 | proteasome subunit beta type 4

_IDPredictionOTHERSPmTPCS_Position
BBOV_IV002060OTHER0.9986230.0001200.001256
No Results

  • Fasta :-

    >BBOV_IV002060 MVVCCSQRTRNVSKPLKYAHTDVDSYGRQNRTNNVQRIEKLAKDTIFCTSGDVADHQYIT QLLQATVRREMLDNNNDHASCHLGPEALHNYLGRVFYARRSKMNPLWNSAIVAGVSQNGP FLGYADMYGTQYKDDFVVTGMGKYFAIGPLREKHNPNMTKDAARALAIDCMRLLYLRDCS AGDRIQIAYVTAQGIELEEPMQIQAEWGYEKFLAPTCLRPIAGCQF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_IV002060.fa Sequence name : BBOV_IV002060 Sequence length : 226 VALUES OF COMPUTED PARAMETERS Coef20 : 4.295 CoefTot : -0.407 ChDiff : 3 ZoneTo : 21 KR : 4 DE : 0 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.824 0.818 -0.008 0.446 MesoH : -0.796 0.015 -0.452 0.141 MuHd_075 : 9.417 7.863 2.582 3.217 MuHd_095 : 24.741 19.142 8.942 5.223 MuHd_100 : 32.419 22.743 10.726 6.685 MuHd_105 : 38.272 25.112 11.769 8.190 Hmax_075 : -4.317 5.500 -4.015 1.270 Hmax_095 : 5.600 5.600 2.260 0.542 Hmax_100 : 15.200 8.700 3.936 2.480 Hmax_105 : 0.262 8.487 3.751 1.557 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2341 0.7659 DFMC : 0.1591 0.8409 This protein is probably imported in mitochondria. f(Ser) = 0.0952 f(Arg) = 0.0952 CMi = 0.46838 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 226 BBOV_IV002060 MVVCCSQRTRNVSKPLKYAHTDVDSYGRQNRTNNVQRIEKLAKDTIFCTSGDVADHQYITQLLQATVRREMLDNNNDHAS 80 CHLGPEALHNYLGRVFYARRSKMNPLWNSAIVAGVSQNGPFLGYADMYGTQYKDDFVVTGMGKYFAIGPLREKHNPNMTK 160 DAARALAIDCMRLLYLRDCSAGDRIQIAYVTAQGIELEEPMQIQAEWGYEKFLAPTCLRPIAGCQF 240 ................................................................................ 80 ................................................................................ 160 .................................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_IV002060 8 VVCCSQR|TR 0.074 . BBOV_IV002060 10 CCSQRTR|NV 0.173 . BBOV_IV002060 14 RTRNVSK|PL 0.081 . BBOV_IV002060 17 NVSKPLK|YA 0.088 . BBOV_IV002060 28 DVDSYGR|QN 0.075 . BBOV_IV002060 31 SYGRQNR|TN 0.285 . BBOV_IV002060 37 RTNNVQR|IE 0.098 . BBOV_IV002060 40 NVQRIEK|LA 0.131 . BBOV_IV002060 43 RIEKLAK|DT 0.076 . BBOV_IV002060 68 LLQATVR|RE 0.068 . BBOV_IV002060 69 LQATVRR|EM 0.142 . BBOV_IV002060 94 LHNYLGR|VF 0.098 . BBOV_IV002060 99 GRVFYAR|RS 0.091 . BBOV_IV002060 100 RVFYARR|SK 0.166 . BBOV_IV002060 102 FYARRSK|MN 0.093 . BBOV_IV002060 133 MYGTQYK|DD 0.086 . BBOV_IV002060 143 VVTGMGK|YF 0.060 . BBOV_IV002060 151 FAIGPLR|EK 0.077 . BBOV_IV002060 153 IGPLREK|HN 0.057 . BBOV_IV002060 160 HNPNMTK|DA 0.094 . BBOV_IV002060 164 MTKDAAR|AL 0.093 . BBOV_IV002060 172 LAIDCMR|LL 0.073 . BBOV_IV002060 177 MRLLYLR|DC 0.117 . BBOV_IV002060 184 DCSAGDR|IQ 0.083 . BBOV_IV002060 211 AEWGYEK|FL 0.059 . BBOV_IV002060 219 LAPTCLR|PI 0.084 . ____________________________^_________________

  • Fasta :-

    >BBOV_IV002060 CTTCCTCAATTTTTATCACTATATTTATAACACAATGAGCGGATACGTAACGGGAGCTGC CGTAGTAGGCATGAAGTTTGATGGTGGTGTGTTGCTCGCAGCGGACACGAAATGTAAGTA AACCGCTAAAGTACGCACATACCGATGTAGACAGCTATGGACGACAGAACCGTACCAATA ACGTACAACGAATTGAAAAGTTAGCCAAGGACACCATTTTCTGCACATCAGGGGATGTGG CCGATCACCAGTATATCACACAACTGCTCCAAGCAACAGTTAGACGAGAGATGCTAGATA ATAACAACGATCATGCAAGTTGCCACCTAGGTCCTGAAGCTTTGCACAACTACCTCGGCC GTGTCTTCTACGCAAGACGCTCCAAGATGAACCCATTGTGGAACTCAGCTATCGTAGCAG GAGTCAGCCAAAATGGCCCTTTCCTAGGATATGCAGACATGTACGGAACGCAGTATAAAG ATGATTTTGTAGTAACAGGGATGGGCAAGTACTTCGCAATCGGACCACTAAGGGAAAAGC ATAACCCAAACATGACCAAAGATGCCGCTAGAGCATTAGCCATCGATTGCATGAGACTGC TCTACTTGCGCGACTGCTCAGCAGGCGATCGCATACAAATCGCTTATGTCACCGCCCAGG GCATAGAATTGGAAGAACCCATGCAAATACAAGCGGAATGGGGATATGAAAAGTTCCTAG CACCAACCTGCCTAAGGCCTATAGCTGGGTGCCAGTTCTAATCATAACAATGATGTAATG TGGTAACTA
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  • Fasta :-

    MVVCCSQRTRNVSKPLKYAHTDVDSYGRQNRTNNVQRIEKLAKDTIFCTSGDVADHQYIT QLLQATVRREMLDNNNDHASCHLGPEALHNYLGRVFYARRSKMNPLWNSAIVAGVSQNGP FLGYADMYGTQYKDDFVVTGMGKYFAIGPLREKHNPNMTKDAARALAIDCMRLLYLRDCS AGDRIQIAYVTAQGIELEEPMQIQAEWGYEKFLAPTCLRPIAGCQF

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India