BBOV_IV003800 | ATP-dependent Clp protease proteolytic subunit, putative

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_IDPredictionOTHERSPmTPCS_Position
BBOV_IV003800OTHER0.9998790.0000990.000022
No Results

  • Fasta :-

    >BBOV_IV003800 MTPLGVPLVEYKIPGTQRSEFHDIHTRLYRERILFVSQSLDESYTNMIIGTLLCLDSDSN EKPITLYINSQGGPSTAGITLYDTIKHLKSKIATINVGFCSATASLLLASGTPGMRSALP HSRVVMHQPAGTLEGSAEQIRSQAQYMLNMKRILQKLYSQVTNQPLDNIAKDLEREQFMS AEESLQYGLVDRIIRTDHAK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_IV003800.fa Sequence name : BBOV_IV003800 Sequence length : 200 VALUES OF COMPUTED PARAMETERS Coef20 : 3.193 CoefTot : -0.512 ChDiff : 0 ZoneTo : 9 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.665 1.671 0.314 0.576 MesoH : -0.005 0.365 -0.226 0.242 MuHd_075 : 10.986 9.978 3.795 3.022 MuHd_095 : 21.212 16.317 4.692 4.028 MuHd_100 : 19.158 14.205 4.573 3.372 MuHd_105 : 11.300 9.493 3.343 2.040 Hmax_075 : -0.467 11.900 -0.306 2.963 Hmax_095 : 9.625 11.550 0.638 3.736 Hmax_100 : 7.600 7.600 0.593 3.130 Hmax_105 : 12.250 11.550 2.095 4.223 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9902 0.0098 DFMC : 0.9898 0.0102
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 200 BBOV_IV003800 MTPLGVPLVEYKIPGTQRSEFHDIHTRLYRERILFVSQSLDESYTNMIIGTLLCLDSDSNEKPITLYINSQGGPSTAGIT 80 LYDTIKHLKSKIATINVGFCSATASLLLASGTPGMRSALPHSRVVMHQPAGTLEGSAEQIRSQAQYMLNMKRILQKLYSQ 160 VTNQPLDNIAKDLEREQFMSAEESLQYGLVDRIIRTDHAK 240 ................................................................................ 80 ................................................................................ 160 ........................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_IV003800 12 VPLVEYK|IP 0.075 . BBOV_IV003800 18 KIPGTQR|SE 0.139 . BBOV_IV003800 27 FHDIHTR|LY 0.072 . BBOV_IV003800 30 IHTRLYR|ER 0.151 . BBOV_IV003800 32 TRLYRER|IL 0.114 . BBOV_IV003800 62 DSDSNEK|PI 0.060 . BBOV_IV003800 86 TLYDTIK|HL 0.071 . BBOV_IV003800 89 DTIKHLK|SK 0.079 . BBOV_IV003800 91 IKHLKSK|IA 0.084 . BBOV_IV003800 116 SGTPGMR|SA 0.101 . BBOV_IV003800 123 SALPHSR|VV 0.129 . BBOV_IV003800 141 GSAEQIR|SQ 0.141 . BBOV_IV003800 151 QYMLNMK|RI 0.062 . BBOV_IV003800 152 YMLNMKR|IL 0.149 . BBOV_IV003800 156 MKRILQK|LY 0.100 . BBOV_IV003800 171 PLDNIAK|DL 0.093 . BBOV_IV003800 175 IAKDLER|EQ 0.074 . BBOV_IV003800 192 QYGLVDR|II 0.081 . BBOV_IV003800 195 LVDRIIR|TD 0.194 . BBOV_IV003800 200 IRTDHAK|-- 0.079 . ____________________________^_________________

  • Fasta :-

    >BBOV_IV003800 ATGACGCCTTTAGGTGTGCCTCTCGTGGAGTACAAAATACCTGGAACCCAGCGATCTGAA TTCCATGATATTCATACAAGGTTATATAGAGAACGTATTCTATTTGTCAGTCAATCTCTC GATGAGAGCTACACTAATATGATCATCGGCACACTTCTATGTCTCGATAGCGACTCCAAT GAGAAACCAATCACGTTGTATATCAATAGCCAGGGTGGCCCATCTACCGCTGGTATAACA TTATATGATACGATTAAACACCTGAAGTCTAAAATTGCAACAATAAATGTTGGCTTCTGC AGTGCAACGGCTTCGCTACTGCTGGCCTCTGGAACACCGGGGATGCGCTCAGCTCTACCT CATTCAAGAGTTGTTATGCATCAACCCGCTGGGACACTGGAAGGGTCAGCAGAGCAAATC AGAAGCCAGGCTCAATATATGCTTAATATGAAGCGAATCTTGCAGAAATTATACAGCCAA GTAACTAATCAGCCTTTGGACAACATAGCTAAGGATTTAGAACGTGAACAGTTCATGTCA GCTGAAGAAAGCCTACAATACGGATTGGTTGACAGAATTATCAGGACAGACCATGCAAAA TAGCATACATATAACAGACGCAACTTTGCCGAACGTCCACTAAAAAATAATTCCTGGTT
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  • Fasta :-

    MTPLGVPLVEYKIPGTQRSEFHDIHTRLYRERILFVSQSLDESYTNMIIGTLLCLDSDSN EKPITLYINSQGGPSTAGITLYDTIKHLKSKIATINVGFCSATASLLLASGTPGMRSALP HSRVVMHQPAGTLEGSAEQIRSQAQYMLNMKRILQKLYSQVTNQPLDNIAKDLEREQFMS AEESLQYGLVDRIIRTDHAK

  • title: active site residues
  • coordinates: A102,H127,E176
No Results
No Results
IDSitePeptideScoreMethod
BBOV_IV003800180 SEQFMSAEES0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India