BBOV_IV003850 | ATP-dependent Clp protease proteolytic subunit, putative

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_IDPredictionOTHERSPmTPCS_Position
BBOV_IV003850SP0.3655110.6315860.002903CS pos: 22-23. FIA-TF. Pr: 0.4635
No Results

  • Fasta :-

    >BBOV_IV003850 MATMHCITGILTIIVLLQGFIATFKIERRNRYYKPCSNYLTDKLFMTPLGVPLVEYKIPG TQRSEFHDIHTRLYRERILFVSQSLDESYTNMIIGTLLCLDSDSNEKPITLYINSQGGPS TAGITLYDTIKHLKSKIATINVGFCSATASLLLASGTPGMRSALPHSRVVMHQPAGTLEG SAEQIRSQAQYMLNMKRILQKLYSQVTNQPLDNIAKDLEREQFMSAEESLQYGLVDRIIR TDHAK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_IV003850.fa Sequence name : BBOV_IV003850 Sequence length : 245 VALUES OF COMPUTED PARAMETERS Coef20 : 4.333 CoefTot : -1.058 ChDiff : 4 ZoneTo : 41 KR : 5 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.082 2.324 0.487 0.795 MesoH : -0.005 0.365 -0.226 0.242 MuHd_075 : 19.992 18.677 7.938 5.217 MuHd_095 : 17.201 13.372 5.599 2.866 MuHd_100 : 24.442 19.756 7.269 5.308 MuHd_105 : 29.883 24.060 9.600 6.892 Hmax_075 : 17.033 25.200 -1.471 5.189 Hmax_095 : 8.500 19.775 -1.956 6.851 Hmax_100 : 13.500 28.800 -1.842 5.210 Hmax_105 : -4.600 29.100 1.058 6.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9888 0.0112 DFMC : 0.9785 0.0215
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 245 BBOV_IV003850 MATMHCITGILTIIVLLQGFIATFKIERRNRYYKPCSNYLTDKLFMTPLGVPLVEYKIPGTQRSEFHDIHTRLYRERILF 80 VSQSLDESYTNMIIGTLLCLDSDSNEKPITLYINSQGGPSTAGITLYDTIKHLKSKIATINVGFCSATASLLLASGTPGM 160 RSALPHSRVVMHQPAGTLEGSAEQIRSQAQYMLNMKRILQKLYSQVTNQPLDNIAKDLEREQFMSAEESLQYGLVDRIIR 240 TDHAK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_IV003850 25 GFIATFK|IE 0.056 . BBOV_IV003850 28 ATFKIER|RN 0.072 . BBOV_IV003850 29 TFKIERR|NR 0.108 . BBOV_IV003850 31 KIERRNR|YY 0.251 . BBOV_IV003850 34 RRNRYYK|PC 0.286 . BBOV_IV003850 43 SNYLTDK|LF 0.065 . BBOV_IV003850 57 VPLVEYK|IP 0.075 . BBOV_IV003850 63 KIPGTQR|SE 0.139 . BBOV_IV003850 72 FHDIHTR|LY 0.072 . BBOV_IV003850 75 IHTRLYR|ER 0.151 . BBOV_IV003850 77 TRLYRER|IL 0.114 . BBOV_IV003850 107 DSDSNEK|PI 0.060 . BBOV_IV003850 131 TLYDTIK|HL 0.071 . BBOV_IV003850 134 DTIKHLK|SK 0.079 . BBOV_IV003850 136 IKHLKSK|IA 0.084 . BBOV_IV003850 161 SGTPGMR|SA 0.101 . BBOV_IV003850 168 SALPHSR|VV 0.129 . BBOV_IV003850 186 GSAEQIR|SQ 0.141 . BBOV_IV003850 196 QYMLNMK|RI 0.062 . BBOV_IV003850 197 YMLNMKR|IL 0.149 . BBOV_IV003850 201 MKRILQK|LY 0.100 . BBOV_IV003850 216 PLDNIAK|DL 0.093 . BBOV_IV003850 220 IAKDLER|EQ 0.074 . BBOV_IV003850 237 QYGLVDR|II 0.081 . BBOV_IV003850 240 LVDRIIR|TD 0.194 . BBOV_IV003850 245 IRTDHAK|-- 0.079 . ____________________________^_________________

  • Fasta :-

    >BBOV_IV003850 AATAAAGCATTGTTATTTTGTTAGAACACCTACCTTAGTTGGTCTTTCGGCTACGATAAG TAACTGACAATGTTGATCATTCTCCACGTAGCATATGGCAACGATGCATTGTATCACCGG AATATTAACTATCATAGTGCTTCTACAGGGATTTATTGCCACTTTTAAAATAGAACGTAG AAACAGGTATTACAAGCCTTGCAGCAACTATTTAACCGACAAGTTGTTTATGACGCCTTT AGGTGTGCCTCTCGTGGAGTACAAAATACCTGGAACCCAGCGATCTGAATTCCATGATAT TCATACAAGGTTATATAGAGAACGTATTCTATTTGTCAGTCAATCTCTCGATGAGAGCTA CACTAATATGATCATCGGCACACTTCTATGTCTCGATAGCGACTCCAATGAGAAACCAAT CACGTTGTATATCAATAGCCAGGGTGGCCCATCTACCGCTGGTATAACATTATATGATAC GATTAAACACCTGAAGTCTAAAATTGCAACAATAAATGTTGGCTTCTGCAGTGCAACGGC TTCGCTACTGCTGGCCTCTGGAACACCGGGGATGCGCTCAGCTCTACCTCATTCAAGAGT TGTTATGCATCAACCCGCTGGGACACTGGAAGGGTCAGCAGAGCAAATCAGAAGCCAGGC TCAATATATGCTTAATATGAAGCGAATCTTGCAGAAATTATACAGCCAAGTAACTAATCA GCCTTTGGACAACATAGCTAAGGATTTAGAACGTGAACAGTTCATGTCAGCTGAAGAAAG CCTACAATACGGATTGGTTGACAGAATTATCAGGACAGACCATGCAAAATAG
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  • Fasta :-

    MATMHCITGILTIIVLLQGFIATFKIERRNRYYKPCSNYLTDKLFMTPLGVPLVEYKIPG TQRSEFHDIHTRLYRERILFVSQSLDESYTNMIIGTLLCLDSDSNEKPITLYINSQGGPS TAGITLYDTIKHLKSKIATINVGFCSATASLLLASGTPGMRSALPHSRVVMHQPAGTLEG SAEQIRSQAQYMLNMKRILQKLYSQVTNQPLDNIAKDLEREQFMSAEESLQYGLVDRIIR TDHAK

  • title: active site residues
  • coordinates: A147,H172,E221
No Results
No Results
IDSitePeptideScoreMethod
BBOV_IV003850225 SEQFMSAEES0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India