BBOV_V000160 | clpC

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005524      

  • Computed_GO_Functions:  ATP binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
BBOV_V000160OTHER0.9990080.0000730.000919
No Results

  • Fasta :-

    >BBOV_V000160 MLNKFYQYLDFHNIDSKIISHFNLFSELLKYSYNTFAKYNRPKINFNINCVKKYENILLY DYFSNYIFNTLKTYNKSLKNKIISYKYPNILFSVLIKLYSLFKTNIVHVSNNKLYLTYVF KLLGKINNIIANKNEDVDVAFDFCYILHSTNKDVLKELNEKNELIYVNLYYSTIVSRLYK YDLLQNINRSHIKYLTYITKTLHNTRDYIYACSVLYDFIKVKHQKNICNLFINTKIKSVN KSIISCFINNFINVNNILDYSNTSLVYNFYNLINKFIFGQDLITKKISTYLLNFNFNNKI KPIGSFLLCGPSGTGKTEIVKLITNYLYKSQTNLLQFDMSEYKESHSVSKLIGAPPGYVG HESGGNLINKINSVESPIVLFDEIEKADKNIFSIFLQILDEGLLTDSKGNSCKFNKSLIF FTSNLGSKIFNTINKNEQFTTKYYNKVREDINSNFKLEFINRLNDIIIFNPLSSLHLYNI LEKYLYSEEYNTKVNMSTSIKAMLSNLSYCPTQGSRFLVNNINKIVNNLNLLQENKLFRS DNNFTKYIILQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_V000160.fa Sequence name : BBOV_V000160 Sequence length : 551 VALUES OF COMPUTED PARAMETERS Coef20 : 3.549 CoefTot : -0.472 ChDiff : 24 ZoneTo : 9 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.753 1.388 -0.014 0.501 MesoH : -0.418 0.385 -0.387 0.249 MuHd_075 : 11.231 13.235 5.498 3.528 MuHd_095 : 12.297 9.332 2.650 2.373 MuHd_100 : 19.152 6.499 3.724 2.629 MuHd_105 : 26.486 16.761 6.790 5.891 Hmax_075 : -1.050 9.567 -2.324 3.290 Hmax_095 : -0.875 3.850 -3.062 2.476 Hmax_100 : 9.600 7.000 -0.885 3.720 Hmax_105 : 7.233 5.950 -1.191 3.593 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8577 0.1423 DFMC : 0.8893 0.1107
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 551 BBOV_V000160 MLNKFYQYLDFHNIDSKIISHFNLFSELLKYSYNTFAKYNRPKINFNINCVKKYENILLYDYFSNYIFNTLKTYNKSLKN 80 KIISYKYPNILFSVLIKLYSLFKTNIVHVSNNKLYLTYVFKLLGKINNIIANKNEDVDVAFDFCYILHSTNKDVLKELNE 160 KNELIYVNLYYSTIVSRLYKYDLLQNINRSHIKYLTYITKTLHNTRDYIYACSVLYDFIKVKHQKNICNLFINTKIKSVN 240 KSIISCFINNFINVNNILDYSNTSLVYNFYNLINKFIFGQDLITKKISTYLLNFNFNNKIKPIGSFLLCGPSGTGKTEIV 320 KLITNYLYKSQTNLLQFDMSEYKESHSVSKLIGAPPGYVGHESGGNLINKINSVESPIVLFDEIEKADKNIFSIFLQILD 400 EGLLTDSKGNSCKFNKSLIFFTSNLGSKIFNTINKNEQFTTKYYNKVREDINSNFKLEFINRLNDIIIFNPLSSLHLYNI 480 LEKYLYSEEYNTKVNMSTSIKAMLSNLSYCPTQGSRFLVNNINKIVNNLNLLQENKLFRSDNNFTKYIILQ 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ....................................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_V000160 4 ---MLNK|FY 0.061 . BBOV_V000160 17 FHNIDSK|II 0.068 . BBOV_V000160 30 LFSELLK|YS 0.066 . BBOV_V000160 38 SYNTFAK|YN 0.086 . BBOV_V000160 41 TFAKYNR|PK 0.082 . BBOV_V000160 43 AKYNRPK|IN 0.074 . BBOV_V000160 52 FNINCVK|KY 0.067 . BBOV_V000160 53 NINCVKK|YE 0.117 . BBOV_V000160 72 YIFNTLK|TY 0.063 . BBOV_V000160 76 TLKTYNK|SL 0.081 . BBOV_V000160 79 TYNKSLK|NK 0.070 . BBOV_V000160 81 NKSLKNK|II 0.104 . BBOV_V000160 86 NKIISYK|YP 0.069 . BBOV_V000160 97 LFSVLIK|LY 0.066 . BBOV_V000160 103 KLYSLFK|TN 0.059 . BBOV_V000160 113 VHVSNNK|LY 0.054 . BBOV_V000160 121 YLTYVFK|LL 0.073 . BBOV_V000160 125 VFKLLGK|IN 0.057 . BBOV_V000160 133 NNIIANK|NE 0.056 . BBOV_V000160 152 ILHSTNK|DV 0.110 . BBOV_V000160 156 TNKDVLK|EL 0.072 . BBOV_V000160 161 LKELNEK|NE 0.054 . BBOV_V000160 177 YSTIVSR|LY 0.076 . BBOV_V000160 180 IVSRLYK|YD 0.120 . BBOV_V000160 189 LLQNINR|SH 0.141 . BBOV_V000160 193 INRSHIK|YL 0.090 . BBOV_V000160 200 YLTYITK|TL 0.062 . BBOV_V000160 206 KTLHNTR|DY 0.090 . BBOV_V000160 220 VLYDFIK|VK 0.065 . BBOV_V000160 222 YDFIKVK|HQ 0.063 . BBOV_V000160 225 IKVKHQK|NI 0.074 . BBOV_V000160 235 NLFINTK|IK 0.061 . BBOV_V000160 237 FINTKIK|SV 0.166 . BBOV_V000160 241 KIKSVNK|SI 0.084 . BBOV_V000160 275 FYNLINK|FI 0.069 . BBOV_V000160 285 GQDLITK|KI 0.072 . BBOV_V000160 286 QDLITKK|IS 0.081 . BBOV_V000160 299 NFNFNNK|IK 0.058 . BBOV_V000160 301 NFNNKIK|PI 0.089 . BBOV_V000160 316 GPSGTGK|TE 0.073 . BBOV_V000160 321 GKTEIVK|LI 0.060 . BBOV_V000160 329 ITNYLYK|SQ 0.077 . BBOV_V000160 343 FDMSEYK|ES 0.063 . BBOV_V000160 350 ESHSVSK|LI 0.082 . BBOV_V000160 370 GGNLINK|IN 0.073 . BBOV_V000160 386 LFDEIEK|AD 0.057 . BBOV_V000160 389 EIEKADK|NI 0.065 . BBOV_V000160 408 GLLTDSK|GN 0.062 . BBOV_V000160 413 SKGNSCK|FN 0.075 . BBOV_V000160 416 NSCKFNK|SL 0.086 . BBOV_V000160 428 TSNLGSK|IF 0.071 . BBOV_V000160 435 IFNTINK|NE 0.057 . BBOV_V000160 442 NEQFTTK|YY 0.084 . BBOV_V000160 446 TTKYYNK|VR 0.069 . BBOV_V000160 448 KYYNKVR|ED 0.087 . BBOV_V000160 456 DINSNFK|LE 0.057 . BBOV_V000160 462 KLEFINR|LN 0.097 . BBOV_V000160 483 LYNILEK|YL 0.071 . BBOV_V000160 493 SEEYNTK|VN 0.054 . BBOV_V000160 501 NMSTSIK|AM 0.064 . BBOV_V000160 516 CPTQGSR|FL 0.078 . BBOV_V000160 524 LVNNINK|IV 0.071 . BBOV_V000160 536 NLLQENK|LF 0.055 . BBOV_V000160 539 QENKLFR|SD 0.124 . BBOV_V000160 546 SDNNFTK|YI 0.087 . ____________________________^_________________

  • Fasta :-

    >BBOV_V000160 ATGTTAAATAAATTTTACCAATACTTAGATTTTCATAATATAGATAGTAAAATTATTTCA CACTTTAATTTGTTTTCAGAGCTTTTAAAATACAGCTACAATACATTTGCAAAATACAAT AGACCAAAAATTAATTTTAATATAAACTGTGTAAAAAAATACGAAAATATACTTTTATAC GACTATTTTTCTAATTATATATTTAACACTTTAAAAACTTATAACAAATCACTTAAAAAT AAGATAATATCTTACAAATACCCTAACATTTTATTCAGTGTTTTAATAAAGCTGTATAGC TTATTTAAAACTAATATTGTTCACGTATCAAATAACAAGTTATATTTAACTTATGTATTT AAACTATTAGGTAAAATCAACAATATAATTGCAAATAAAAACGAAGACGTTGATGTTGCA TTTGATTTTTGTTATATACTCCACAGTACTAATAAAGACGTACTTAAAGAATTAAATGAA AAAAACGAGCTAATATATGTAAATTTGTATTATAGCACTATTGTGTCTCGTTTATATAAA TATGATTTATTACAAAACATTAATAGATCCCATATTAAATATTTAACTTATATAACAAAA ACTTTACATAACACACGCGATTATATTTATGCTTGTAGTGTTTTATATGATTTTATAAAA GTTAAACATCAAAAAAACATATGTAATTTGTTTATAAATACTAAGATAAAATCTGTAAAT AAATCTATTATAAGCTGCTTTATAAATAATTTTATAAACGTTAATAATATTTTAGACTAT TCTAACACGTCTTTAGTTTATAACTTTTATAATTTAATAAACAAATTTATATTTGGGCAA GATCTAATAACTAAAAAAATATCAACTTATTTATTAAATTTTAATTTTAATAATAAAATT AAACCTATAGGAAGCTTTCTATTATGCGGTCCAAGTGGTACAGGTAAAACTGAAATAGTA AAACTTATAACAAATTATCTTTATAAATCTCAAACTAATTTATTACAATTTGATATGAGT GAGTATAAAGAAAGTCACTCTGTATCTAAACTTATAGGAGCTCCTCCTGGGTATGTAGGA CACGAAAGCGGAGGTAACCTTATAAATAAAATTAATTCTGTAGAGTCTCCTATTGTATTG TTTGACGAAATAGAAAAAGCAGACAAAAATATTTTTTCTATATTTTTACAAATATTAGAC GAGGGATTACTAACAGATTCTAAAGGTAACTCTTGTAAGTTCAATAAATCTTTAATATTT TTTACCAGCAACTTAGGTAGTAAAATATTTAACACTATAAACAAAAACGAACAATTTACT ACTAAATATTACAATAAAGTTAGAGAGGATATAAATTCTAATTTTAAATTAGAATTTATA AATAGATTAAATGATATAATTATATTTAACCCTTTATCCTCTTTACACCTTTACAATATA TTGGAAAAATATTTATATAGCGAAGAGTACAATACTAAAGTTAACATGTCTACATCAATT AAAGCTATGCTGTCTAATTTATCTTACTGCCCTACACAAGGGTCTAGGTTTTTAGTAAAT AATATAAATAAAATAGTAAATAATTTAAATTTACTTCAAGAAAATAAACTATTTAGAAGC GACAATAATTTTACAAAATATATAATTTTACAGTAA
  • Download Fasta

  • Fasta :-

    MLNKFYQYLDFHNIDSKIISHFNLFSELLKYSYNTFAKYNRPKINFNINCVKKYENILLY DYFSNYIFNTLKTYNKSLKNKIISYKYPNILFSVLIKLYSLFKTNIVHVSNNKLYLTYVF KLLGKINNIIANKNEDVDVAFDFCYILHSTNKDVLKELNEKNELIYVNLYYSTIVSRLYK YDLLQNINRSHIKYLTYITKTLHNTRDYIYACSVLYDFIKVKHQKNICNLFINTKIKSVN KSIISCFINNFINVNNILDYSNTSLVYNFYNLINKFIFGQDLITKKISTYLLNFNFNNKI KPIGSFLLCGPSGTGKTEIVKLITNYLYKSQTNLLQFDMSEYKESHSVSKLIGAPPGYVG HESGGNLINKINSVESPIVLFDEIEKADKNIFSIFLQILDEGLLTDSKGNSCKFNKSLIF FTSNLGSKIFNTINKNEQFTTKYYNKVREDINSNFKLEFINRLNDIIIFNPLSSLHLYNI LEKYLYSEEYNTKVNMSTSIKAMLSNLSYCPTQGSRFLVNNINKIVNNLNLLQENKLFRS DNNFTKYIILQ

  • title: ATP binding site
  • coordinates: P311,S312,G313,T314,G315,K316,T317,E318,D382,S423
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India