Chro.10032 | GPI-anchor transamidase (U32517) -related

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008233      

  • Computed_GO_Functions:  peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.10032SP0.1393630.8601650.000471CS pos: 20-21. LFQ-RF. Pr: 0.3825
No Results

  • Fasta :-

    >Chro.10032 MKIFLAFTILLFYSLEILFQRFPTRNKTFEHSFLQLKSQNNWAVIVSTSRYWYNYRHNTN ALSFYNYLRQNGFRDDRIILMLAENIPCNTRNSIPGGVYSEDFDFFYNLNNHTQTMECAD VDYREDEVTVSNFIKVLTNKHDDSVPNKKRLLSDEDSNIFIFLTGHGGDGFLKFQDFEEM TSFELANAIKEMKAHKRFKKIFIISETCQASTLHNHLDFEDVYAIGCSSLGESSYSKHYK VEIGVASIDRFTHFSLADFKNLNRNKLMPIASLIGKYSVFQLKSTPQLKYKSGKTDIKNV YVNEFFFPNIEKLFSLNIGNLILNHKNIKEPIKRVLNEGVSKYLNCSFLYHTLKRYNDLD LIDPLSNCHFKNTLKKAIIFSQKRYVFNSKFSSKKMIDNKSLKLIKAIFGLTFILILVFI LSYYSL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/796 Sequence name : 796 Sequence length : 426 VALUES OF COMPUTED PARAMETERS Coef20 : 4.569 CoefTot : -1.417 ChDiff : 13 ZoneTo : 74 KR : 9 DE : 2 CleavSite : 71 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.412 2.771 0.483 0.931 MesoH : -0.838 0.347 -0.486 0.159 MuHd_075 : 52.610 26.178 13.070 9.964 MuHd_095 : 27.152 18.763 6.608 6.227 MuHd_100 : 25.979 19.547 7.545 7.257 MuHd_105 : 29.199 18.286 7.655 7.652 Hmax_075 : 16.100 11.375 1.287 5.093 Hmax_095 : 19.200 10.325 -0.446 4.795 Hmax_100 : 3.500 8.000 -2.177 4.380 Hmax_105 : 10.850 5.425 -0.237 2.135 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2721 0.7279 DFMC : 0.3076 0.6924 This protein is probably imported in mitochondria. f(Ser) = 0.0811 f(Arg) = 0.0811 CMi = 0.44183 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 426 Chro.10032 MKIFLAFTILLFYSLEILFQRFPTRNKTFEHSFLQLKSQNNWAVIVSTSRYWYNYRHNTNALSFYNYLRQNGFRDDRIIL 80 MLAENIPCNTRNSIPGGVYSEDFDFFYNLNNHTQTMECADVDYREDEVTVSNFIKVLTNKHDDSVPNKKRLLSDEDSNIF 160 IFLTGHGGDGFLKFQDFEEMTSFELANAIKEMKAHKRFKKIFIISETCQASTLHNHLDFEDVYAIGCSSLGESSYSKHYK 240 VEIGVASIDRFTHFSLADFKNLNRNKLMPIASLIGKYSVFQLKSTPQLKYKSGKTDIKNVYVNEFFFPNIEKLFSLNIGN 320 LILNHKNIKEPIKRVLNEGVSKYLNCSFLYHTLKRYNDLDLIDPLSNCHFKNTLKKAIIFSQKRYVFNSKFSSKKMIDNK 400 SLKLIKAIFGLTFILILVFILSYYSL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .......................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.10032 2 -----MK|IF 0.059 . Chro.10032 21 LEILFQR|FP 0.083 . Chro.10032 25 FQRFPTR|NK 0.084 . Chro.10032 27 RFPTRNK|TF 0.063 . Chro.10032 37 HSFLQLK|SQ 0.067 . Chro.10032 50 VIVSTSR|YW 0.088 . Chro.10032 56 RYWYNYR|HN 0.092 . Chro.10032 69 SFYNYLR|QN 0.088 . Chro.10032 74 LRQNGFR|DD 0.149 . Chro.10032 77 NGFRDDR|II 0.141 . Chro.10032 91 NIPCNTR|NS 0.080 . Chro.10032 124 CADVDYR|ED 0.076 . Chro.10032 135 TVSNFIK|VL 0.079 . Chro.10032 140 IKVLTNK|HD 0.066 . Chro.10032 148 DDSVPNK|KR 0.060 . Chro.10032 149 DSVPNKK|RL 0.087 . Chro.10032 150 SVPNKKR|LL 0.238 . Chro.10032 173 GGDGFLK|FQ 0.073 . Chro.10032 190 ELANAIK|EM 0.061 . Chro.10032 193 NAIKEMK|AH 0.060 . Chro.10032 196 KEMKAHK|RF 0.065 . Chro.10032 197 EMKAHKR|FK 0.229 . Chro.10032 199 KAHKRFK|KI 0.088 . Chro.10032 200 AHKRFKK|IF 0.430 . Chro.10032 237 GESSYSK|HY 0.070 . Chro.10032 240 SYSKHYK|VE 0.077 . Chro.10032 250 GVASIDR|FT 0.120 . Chro.10032 260 FSLADFK|NL 0.059 . Chro.10032 264 DFKNLNR|NK 0.064 . Chro.10032 266 KNLNRNK|LM 0.056 . Chro.10032 276 IASLIGK|YS 0.075 . Chro.10032 283 YSVFQLK|ST 0.076 . Chro.10032 289 KSTPQLK|YK 0.075 . Chro.10032 291 TPQLKYK|SG 0.100 . Chro.10032 294 LKYKSGK|TD 0.071 . Chro.10032 298 SGKTDIK|NV 0.082 . Chro.10032 312 FFPNIEK|LF 0.059 . Chro.10032 326 NLILNHK|NI 0.059 . Chro.10032 329 LNHKNIK|EP 0.063 . Chro.10032 333 NIKEPIK|RV 0.073 . Chro.10032 334 IKEPIKR|VL 0.165 . Chro.10032 342 LNEGVSK|YL 0.069 . Chro.10032 354 FLYHTLK|RY 0.059 . Chro.10032 355 LYHTLKR|YN 0.196 . Chro.10032 371 LSNCHFK|NT 0.076 . Chro.10032 375 HFKNTLK|KA 0.058 . Chro.10032 376 FKNTLKK|AI 0.135 . Chro.10032 383 AIIFSQK|RY 0.054 . Chro.10032 384 IIFSQKR|YV 0.291 . Chro.10032 390 RYVFNSK|FS 0.073 . Chro.10032 394 NSKFSSK|KM 0.065 . Chro.10032 395 SKFSSKK|MI 0.125 . Chro.10032 400 KKMIDNK|SL 0.082 . Chro.10032 403 IDNKSLK|LI 0.075 . Chro.10032 406 KSLKLIK|AI 0.066 . ____________________________^_________________

  • Fasta :-

    >Chro.10032 ATGAAGATCTTTTTAGCTTTTACTATTTTGTTATTCTATTCTTTAGAAATCCTTTTTCAA AGATTTCCCACAAGAAATAAAACATTTGAACATTCTTTTCTTCAATTAAAAAGCCAAAAC AATTGGGCAGTTATTGTGTCAACATCTAGATACTGGTATAATTATAGACATAACACAAAT GCACTAAGTTTTTACAATTATCTGAGGCAAAATGGCTTTAGAGATGACAGAATTATTTTA ATGTTGGCAGAAAATATTCCTTGTAATACTAGAAATTCAATTCCTGGTGGAGTCTACAGC GAAGACTTTGATTTTTTCTACAACTTAAACAATCATACACAAACTATGGAATGTGCAGAC GTAGACTACAGGGAAGATGAAGTTACTGTTTCAAATTTCATCAAAGTATTAACAAATAAG CACGATGACAGTGTTCCAAATAAAAAAAGACTTCTTTCAGATGAAGATTCAAATATATTT ATATTTCTAACAGGTCATGGAGGAGATGGATTTCTCAAATTTCAAGATTTTGAAGAAATG ACATCTTTTGAACTTGCTAATGCAATCAAAGAAATGAAAGCACACAAAAGATTTAAAAAG ATATTTATAATATCAGAAACTTGCCAGGCTTCAACACTTCATAACCACTTGGATTTTGAA GATGTTTATGCAATCGGATGTTCCAGTTTAGGCGAAAGCTCCTATAGTAAACATTATAAA GTTGAAATAGGAGTTGCTTCAATTGATAGGTTCACACACTTTAGTTTGGCAGATTTTAAA AACTTGAATAGAAATAAGTTAATGCCCATAGCTAGTTTGATTGGAAAATATTCAGTATTT CAACTGAAGTCCACTCCCCAACTAAAATACAAGTCCGGAAAAACAGATATAAAAAATGTA TATGTTAATGAGTTCTTTTTCCCAAACATTGAAAAACTTTTTTCTTTGAATATTGGAAAC TTAATCCTAAACCATAAAAACATCAAAGAGCCTATAAAACGAGTTTTAAATGAAGGGGTT TCAAAATACTTAAACTGCTCGTTCTTATATCATACATTAAAAAGATATAATGATTTGGAT TTGATAGATCCGTTATCCAATTGTCATTTCAAAAATACACTAAAAAAAGCTATAATATTT TCTCAAAAAAGATATGTTTTTAATTCAAAATTCTCATCAAAAAAAATGATTGATAATAAA TCATTAAAGTTAATCAAAGCCATTTTTGGATTAACTTTTATTTTAATATTAGTATTTATT TTATCATACTATAGTTTATAA
  • Download Fasta

  • Fasta :-

    MKIFLAFTILLFYSLEILFQRFPTRNKTFEHSFLQLKSQNNWAVIVSTSRYWYNYRHNTN ALSFYNYLRQNGFRDDRIILMLAENIPCNTRNSIPGGVYSEDFDFFYNLNNHTQTMECAD VDYREDEVTVSNFIKVLTNKHDDSVPNKKRLLSDEDSNIFIFLTGHGGDGFLKFQDFEEM TSFELANAIKEMKAHKRFKKIFIISETCQASTLHNHLDFEDVYAIGCSSLGESSYSKHYK VEIGVASIDRFTHFSLADFKNLNRNKLMPIASLIGKYSVFQLKSTPQLKYKSGKTDIKNV YVNEFFFPNIEKLFSLNIGNLILNHKNIKEPIKRVLNEGVSKYLNCSFLYHTLKRYNDLD LIDPLSNCHFKNTLKKAIIFSQKRYVFNSKFSSKKMIDNKSLKLIKAIFGLTFILILVFI LSYYSL

    No Results
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IDSitePeptideScoreMethod
Chro.10032153 SKRLLSDEDS0.998unsp

Chro.10032      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India