Chro.10040 | tRNA-guaninine transglycosylase

_IDPredictionOTHERSPmTPCS_Position
Chro.10040OTHER0.9999400.0000150.000046
No Results

  • Fasta :-

    >Chro.10040 MEQIKVTVKWNLKTFEDVDLVLSSPLSEFRERLSNLTGVPASKQKLMSQRGVLRDGMDLN KLGLKPGSKIVLVGTAEGGELKAPSEKTIFFEDLTSDERAKILHEKEIVPLPVGLENLGN TCYLNSIIHMLRSIPSFLQILRNSNLSSSERTSSSSGNSIKFLNSFKQLMDKMDGSIERV VPGECVDLFRRQFPQYSTTTGGAFAMYQQQDAEEVLGSLLTLFRNELDGKDGDDQTIGDL FRFRMKTKFKNTALETDEEVKMEENYKLMCHMGTQLNPVDFLTQGIKLSLDEKVEKKSSE TGIDSIYQKTSEIDSLPPYLLVQLVRFEWKKSSEIARTEATRAKVCRKIEFSQNLDLYEF CSEDLKKILNIGRDISEKKKSKAIEKPDQEEQKMETELYTDCPTGVYELECVVTHQGRTA DSGHYVAWRYCPNDREYIIKFDDDKVSRIKAKDADLSGGRSDYHIAVMLLYKKTVIKASE EEMATLLS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/915 Sequence name : 915 Sequence length : 488 VALUES OF COMPUTED PARAMETERS Coef20 : 3.657 CoefTot : -0.739 ChDiff : -9 ZoneTo : 15 KR : 3 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.447 0.918 -0.045 0.435 MesoH : -0.789 0.126 -0.455 0.159 MuHd_075 : 14.682 5.273 2.288 1.613 MuHd_095 : 39.719 19.207 11.226 6.402 MuHd_100 : 43.551 24.039 12.123 7.354 MuHd_105 : 36.083 22.060 9.969 6.402 Hmax_075 : 4.667 5.800 -3.115 2.567 Hmax_095 : 4.500 10.200 -1.045 3.920 Hmax_100 : 13.400 17.900 1.611 5.760 Hmax_105 : 11.375 11.113 0.719 3.990 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9350 0.0650 DFMC : 0.9492 0.0508
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 488 Chro.10040 MEQIKVTVKWNLKTFEDVDLVLSSPLSEFRERLSNLTGVPASKQKLMSQRGVLRDGMDLNKLGLKPGSKIVLVGTAEGGE 80 LKAPSEKTIFFEDLTSDERAKILHEKEIVPLPVGLENLGNTCYLNSIIHMLRSIPSFLQILRNSNLSSSERTSSSSGNSI 160 KFLNSFKQLMDKMDGSIERVVPGECVDLFRRQFPQYSTTTGGAFAMYQQQDAEEVLGSLLTLFRNELDGKDGDDQTIGDL 240 FRFRMKTKFKNTALETDEEVKMEENYKLMCHMGTQLNPVDFLTQGIKLSLDEKVEKKSSETGIDSIYQKTSEIDSLPPYL 320 LVQLVRFEWKKSSEIARTEATRAKVCRKIEFSQNLDLYEFCSEDLKKILNIGRDISEKKKSKAIEKPDQEEQKMETELYT 400 DCPTGVYELECVVTHQGRTADSGHYVAWRYCPNDREYIIKFDDDKVSRIKAKDADLSGGRSDYHIAVMLLYKKTVIKASE 480 EEMATLLS 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ........ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.10040 5 --MEQIK|VT 0.057 . Chro.10040 9 QIKVTVK|WN 0.061 . Chro.10040 13 TVKWNLK|TF 0.062 . Chro.10040 30 SPLSEFR|ER 0.077 . Chro.10040 32 LSEFRER|LS 0.075 . Chro.10040 43 TGVPASK|QK 0.064 . Chro.10040 45 VPASKQK|LM 0.072 . Chro.10040 50 QKLMSQR|GV 0.135 . Chro.10040 54 SQRGVLR|DG 0.105 . Chro.10040 61 DGMDLNK|LG 0.052 . Chro.10040 65 LNKLGLK|PG 0.062 . Chro.10040 69 GLKPGSK|IV 0.068 . Chro.10040 82 AEGGELK|AP 0.061 . Chro.10040 87 LKAPSEK|TI 0.071 . Chro.10040 99 DLTSDER|AK 0.069 . Chro.10040 101 TSDERAK|IL 0.081 . Chro.10040 106 AKILHEK|EI 0.069 . Chro.10040 132 SIIHMLR|SI 0.116 . Chro.10040 142 SFLQILR|NS 0.063 . Chro.10040 151 NLSSSER|TS 0.123 . Chro.10040 161 SSGNSIK|FL 0.075 . Chro.10040 167 KFLNSFK|QL 0.074 . Chro.10040 172 FKQLMDK|MD 0.077 . Chro.10040 179 MDGSIER|VV 0.102 . Chro.10040 190 ECVDLFR|RQ 0.085 . Chro.10040 191 CVDLFRR|QF 0.104 . Chro.10040 224 SLLTLFR|NE 0.076 . Chro.10040 230 RNELDGK|DG 0.076 . Chro.10040 242 TIGDLFR|FR 0.085 . Chro.10040 244 GDLFRFR|MK 0.094 . Chro.10040 246 LFRFRMK|TK 0.065 . Chro.10040 248 RFRMKTK|FK 0.093 . Chro.10040 250 RMKTKFK|NT 0.070 . Chro.10040 261 ETDEEVK|ME 0.059 . Chro.10040 267 KMEENYK|LM 0.067 . Chro.10040 287 FLTQGIK|LS 0.054 . Chro.10040 293 KLSLDEK|VE 0.059 . Chro.10040 296 LDEKVEK|KS 0.067 . Chro.10040 297 DEKVEKK|SS 0.236 . Chro.10040 309 IDSIYQK|TS 0.063 . Chro.10040 326 LLVQLVR|FE 0.091 . Chro.10040 330 LVRFEWK|KS 0.081 . Chro.10040 331 VRFEWKK|SS 0.204 . Chro.10040 337 KSSEIAR|TE 0.099 . Chro.10040 342 ARTEATR|AK 0.074 . Chro.10040 344 TEATRAK|VC 0.089 . Chro.10040 347 TRAKVCR|KI 0.236 . Chro.10040 348 RAKVCRK|IE 0.085 . Chro.10040 366 FCSEDLK|KI 0.064 . Chro.10040 367 CSEDLKK|IL 0.133 . Chro.10040 373 KILNIGR|DI 0.124 . Chro.10040 378 GRDISEK|KK 0.074 . Chro.10040 379 RDISEKK|KS 0.107 . Chro.10040 380 DISEKKK|SK 0.172 . Chro.10040 382 SEKKKSK|AI 0.079 . Chro.10040 386 KSKAIEK|PD 0.072 . Chro.10040 393 PDQEEQK|ME 0.065 . Chro.10040 418 VVTHQGR|TA 0.105 . Chro.10040 429 GHYVAWR|YC 0.091 . Chro.10040 435 RYCPNDR|EY 0.087 . Chro.10040 440 DREYIIK|FD 0.083 . Chro.10040 445 IKFDDDK|VS 0.059 . Chro.10040 448 DDDKVSR|IK 0.074 . Chro.10040 450 DKVSRIK|AK 0.068 . Chro.10040 452 VSRIKAK|DA 0.136 . Chro.10040 460 ADLSGGR|SD 0.096 . Chro.10040 472 AVMLLYK|KT 0.059 . Chro.10040 473 VMLLYKK|TV 0.092 . Chro.10040 477 YKKTVIK|AS 0.077 . ____________________________^_________________

  • Fasta :-

    >Chro.10040 ATGGAGCAAATAAAAGTAACAGTCAAGTGGAACCTGAAAACCTTTGAAGATGTTGATCTT GTTTTGTCAAGTCCTCTTTCTGAGTTTAGGGAGAGGTTAAGCAATTTGACAGGGGTACCT GCTTCTAAGCAGAAATTAATGTCCCAGAGAGGTGTATTAAGAGATGGGATGGATTTAAAT AAACTTGGTTTAAAGCCTGGGTCAAAGATAGTTCTTGTGGGTACTGCAGAAGGGGGTGAA CTGAAGGCCCCATCAGAGAAAACTATATTTTTTGAGGACTTAACTTCGGATGAAAGGGCA AAGATTTTGCATGAAAAGGAAATAGTACCTCTTCCGGTAGGCCTAGAGAATCTGGGAAAT ACGTGCTATTTAAATTCAATAATTCATATGTTGAGAAGTATCCCTAGTTTTTTACAGATT TTGAGAAATAGCAATTTGAGCTCATCTGAAAGAACAAGTTCAAGTTCAGGAAATTCAATT AAATTTCTCAATTCGTTTAAACAGTTAATGGACAAGATGGACGGAAGCATTGAAAGAGTG GTTCCAGGAGAGTGCGTTGACTTATTTAGGCGTCAGTTCCCCCAATATAGTACAACAACT GGAGGAGCTTTTGCGATGTACCAACAACAAGATGCAGAGGAAGTTTTGGGAAGTTTGCTT ACATTGTTTAGAAACGAGCTAGACGGAAAAGATGGAGATGATCAAACAATAGGGGATTTA TTCCGTTTTAGAATGAAAACTAAATTTAAAAATACTGCATTAGAGACTGACGAGGAAGTT AAAATGGAGGAGAATTATAAGCTTATGTGTCATATGGGAACTCAATTGAATCCTGTAGAC TTCTTAACTCAAGGTATTAAGCTCTCATTAGATGAGAAAGTTGAGAAGAAATCTTCTGAA ACAGGTATCGACTCTATTTATCAAAAAACTTCGGAAATAGATTCTTTGCCACCATATTTA CTTGTACAGCTCGTACGATTTGAATGGAAAAAATCTAGTGAGATTGCAAGAACAGAGGCT ACTAGAGCAAAAGTGTGTAGAAAGATTGAGTTTTCCCAAAATTTAGATCTTTATGAGTTT TGCTCTGAAGATTTAAAAAAAATCCTTAATATTGGAAGAGATATCTCAGAGAAAAAGAAG AGTAAAGCCATAGAGAAGCCTGATCAAGAAGAACAGAAAATGGAAACAGAGTTATATACA GATTGTCCTACAGGAGTATATGAACTCGAATGCGTAGTTACTCACCAAGGTCGTACTGCC GACAGCGGACATTACGTTGCTTGGAGATATTGTCCAAACGATCGGGAATACATTATTAAA TTTGATGACGACAAGGTCTCGAGAATAAAAGCCAAGGATGCAGATCTTTCAGGTGGTAGA TCTGATTACCACATAGCTGTAATGCTTTTATACAAAAAAACAGTAATTAAGGCTTCAGAA GAGGAGATGGCCACATTATTAAGTTAG
  • Download Fasta

  • Fasta :-

    MEQIKVTVKWNLKTFEDVDLVLSSPLSEFRERLSNLTGVPASKQKLMSQRGVLRDGMDLN KLGLKPGSKIVLVGTAEGGELKAPSEKTIFFEDLTSDERAKILHEKEIVPLPVGLENLGN TCYLNSIIHMLRSIPSFLQILRNSNLSSSERTSSSSGNSIKFLNSFKQLMDKMDGSIERV VPGECVDLFRRQFPQYSTTTGGAFAMYQQQDAEEVLGSLLTLFRNELDGKDGDDQTIGDL FRFRMKTKFKNTALETDEEVKMEENYKLMCHMGTQLNPVDFLTQGIKLSLDEKVEKKSSE TGIDSIYQKTSEIDSLPPYLLVQLVRFEWKKSSEIARTEATRAKVCRKIEFSQNLDLYEF CSEDLKKILNIGRDISEKKKSKAIEKPDQEEQKMETELYTDCPTGVYELECVVTHQGRTA DSGHYVAWRYCPNDREYIIKFDDDKVSRIKAKDADLSGGRSDYHIAVMLLYKKTVIKASE EEMATLLS

  • title: Active Site
  • coordinates: N117,C122,H424,D443
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.10040153 SSERTSSSSG0.994unspChro.10040153 SSERTSSSSG0.994unspChro.10040153 SSERTSSSSG0.994unspChro.10040154 SERTSSSSGN0.991unspChro.10040298 SVEKKSSETG0.99unspChro.10040311 SYQKTSEIDS0.996unspChro.10040376 SGRDISEKKK0.994unspChro.10040457 SDADLSGGRS0.991unspChro.10040479 SVIKASEEEM0.996unspChro.1004096 SEDLTSDERA0.994unspChro.10040147 SNSNLSSSER0.993unsp

Chro.10040      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India