Chro.10044 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
Chro.10044OTHER0.9999670.0000200.000014
No Results

  • Fasta :-

    >Chro.10044 MSTKENVIVYWEKQGNDRMCALHCLNSILQGPYFDEAFLSKIAYEIDDMERRLLEKSNST FKTISDNNSQNASYDGFFSIMVLQECLQRHGYSCIPAANPRVQDYILYPSSCCGYIINSS EHWTSIRCVKGKWFNLDSLKAAPIHIDYFEVSKYLQEIMFSGKSVFVVQKIQNETDSHSI PLPDPDPFLRPIKNNGKQRFYLTASEIENLVLEKQKEENRVSQMGDETPNKNFMYSKKPV EYSWPTSGGNVLQSTLNNVDQSNEMTSEEKELQKVLRESAIEFAKSIPLPDEPPADHVNS IQIRVRSKVGSSFVRRFDKTNSCKHLFSWIEYEMALLGNSIHGSPYSFVSQFPYLKVSKF DENSIKISRSDISEMILNSPTFNDIGINENTLLLLNL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/124 Sequence name : 124 Sequence length : 397 VALUES OF COMPUTED PARAMETERS Coef20 : 3.583 CoefTot : -0.001 ChDiff : -8 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.924 0.741 0.055 0.417 MesoH : -0.678 0.115 -0.367 0.174 MuHd_075 : 23.021 1.971 3.482 4.369 MuHd_095 : 18.154 10.304 4.770 3.775 MuHd_100 : 9.933 8.904 2.521 2.917 MuHd_105 : 3.653 5.904 1.352 1.727 Hmax_075 : -7.000 -3.033 -4.229 1.038 Hmax_095 : -7.200 -0.700 -4.544 1.500 Hmax_100 : -9.100 0.900 -4.632 1.360 Hmax_105 : -5.700 2.400 -3.015 1.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9419 0.0581 DFMC : 0.9268 0.0732
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 397 Chro.10044 MSTKENVIVYWEKQGNDRMCALHCLNSILQGPYFDEAFLSKIAYEIDDMERRLLEKSNSTFKTISDNNSQNASYDGFFSI 80 MVLQECLQRHGYSCIPAANPRVQDYILYPSSCCGYIINSSEHWTSIRCVKGKWFNLDSLKAAPIHIDYFEVSKYLQEIMF 160 SGKSVFVVQKIQNETDSHSIPLPDPDPFLRPIKNNGKQRFYLTASEIENLVLEKQKEENRVSQMGDETPNKNFMYSKKPV 240 EYSWPTSGGNVLQSTLNNVDQSNEMTSEEKELQKVLRESAIEFAKSIPLPDEPPADHVNSIQIRVRSKVGSSFVRRFDKT 320 NSCKHLFSWIEYEMALLGNSIHGSPYSFVSQFPYLKVSKFDENSIKISRSDISEMILNSPTFNDIGINENTLLLLNL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.10044 4 ---MSTK|EN 0.063 . Chro.10044 13 VIVYWEK|QG 0.064 . Chro.10044 18 EKQGNDR|MC 0.073 . Chro.10044 41 DEAFLSK|IA 0.078 . Chro.10044 51 EIDDMER|RL 0.067 . Chro.10044 52 IDDMERR|LL 0.163 . Chro.10044 56 ERRLLEK|SN 0.092 . Chro.10044 62 KSNSTFK|TI 0.080 . Chro.10044 89 LQECLQR|HG 0.077 . Chro.10044 101 IPAANPR|VQ 0.101 . Chro.10044 127 EHWTSIR|CV 0.118 . Chro.10044 130 TSIRCVK|GK 0.195 . Chro.10044 132 IRCVKGK|WF 0.070 . Chro.10044 140 FNLDSLK|AA 0.069 . Chro.10044 153 DYFEVSK|YL 0.068 . Chro.10044 163 EIMFSGK|SV 0.132 . Chro.10044 170 SVFVVQK|IQ 0.064 . Chro.10044 190 DPDPFLR|PI 0.098 . Chro.10044 193 PFLRPIK|NN 0.149 . Chro.10044 197 PIKNNGK|QR 0.058 . Chro.10044 199 KNNGKQR|FY 0.132 . Chro.10044 214 ENLVLEK|QK 0.065 . Chro.10044 216 LVLEKQK|EE 0.062 . Chro.10044 220 KQKEENR|VS 0.080 . Chro.10044 231 GDETPNK|NF 0.059 . Chro.10044 237 KNFMYSK|KP 0.055 . Chro.10044 238 NFMYSKK|PV 0.219 . Chro.10044 270 EMTSEEK|EL 0.064 . Chro.10044 274 EEKELQK|VL 0.059 . Chro.10044 277 ELQKVLR|ES 0.101 . Chro.10044 285 SAIEFAK|SI 0.071 . Chro.10044 304 VNSIQIR|VR 0.140 . Chro.10044 306 SIQIRVR|SK 0.122 . Chro.10044 308 QIRVRSK|VG 0.066 . Chro.10044 315 VGSSFVR|RF 0.098 . Chro.10044 316 GSSFVRR|FD 0.237 . Chro.10044 319 FVRRFDK|TN 0.136 . Chro.10044 324 DKTNSCK|HL 0.069 . Chro.10044 356 SQFPYLK|VS 0.056 . Chro.10044 359 PYLKVSK|FD 0.068 . Chro.10044 366 FDENSIK|IS 0.063 . Chro.10044 369 NSIKISR|SD 0.103 . ____________________________^_________________

  • Fasta :-

    >Chro.10044 ATGAGCACAAAAGAGAATGTCATAGTCTATTGGGAGAAACAAGGAAACGACAGGATGTGT GCTCTACACTGTTTAAACTCAATTCTCCAAGGACCATATTTTGATGAAGCTTTTCTCTCT AAGATTGCTTATGAAATAGATGACATGGAAAGACGCTTATTAGAAAAAAGTAACTCAACT TTTAAGACAATTTCCGATAATAATTCTCAAAACGCTTCCTACGATGGCTTCTTCTCAATC ATGGTTCTTCAGGAATGTTTACAAAGACATGGATACTCTTGTATACCAGCAGCAAATCCG AGAGTTCAAGATTATATTTTGTATCCATCGTCTTGCTGTGGCTATATCATTAACTCATCA GAACACTGGACTTCAATAAGATGCGTCAAAGGAAAGTGGTTTAATTTAGATAGTCTTAAG GCTGCTCCTATTCACATTGATTATTTCGAGGTTTCAAAGTACTTGCAAGAAATTATGTTC TCTGGAAAGAGTGTTTTTGTTGTACAAAAAATTCAGAATGAAACTGATTCACATTCAATT CCTTTACCTGATCCCGACCCATTTCTTAGACCAATAAAGAACAATGGTAAACAAAGATTT TATCTCACTGCTTCAGAAATTGAGAACCTTGTTTTGGAGAAACAAAAAGAAGAAAATAGA GTATCTCAAATGGGTGATGAAACCCCAAATAAGAATTTTATGTATTCTAAGAAACCGGTT GAATACTCATGGCCAACTTCTGGCGGAAATGTGTTGCAGTCTACATTAAATAATGTTGAT CAATCTAATGAAATGACATCCGAAGAAAAAGAACTTCAGAAAGTATTAAGGGAATCTGCA ATAGAGTTTGCTAAGAGTATTCCTCTTCCGGATGAACCCCCTGCAGATCATGTCAATTCT ATCCAAATTCGTGTCAGGAGCAAAGTTGGATCATCTTTTGTCAGAAGGTTTGACAAGACT AATTCCTGTAAGCATCTATTCTCTTGGATCGAATATGAAATGGCACTATTGGGGAATTCA ATTCATGGTAGCCCATATTCTTTCGTTTCTCAATTTCCCTATCTCAAAGTTTCAAAATTT GATGAAAATTCGATTAAAATTTCGAGATCTGATATTAGTGAGATGATCCTTAATTCACCA ACTTTCAATGATATTGGTATTAATGAGAACACTCTATTACTACTTAATCTTTAA
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  • Fasta :-

    MSTKENVIVYWEKQGNDRMCALHCLNSILQGPYFDEAFLSKIAYEIDDMERRLLEKSNST FKTISDNNSQNASYDGFFSIMVLQECLQRHGYSCIPAANPRVQDYILYPSSCCGYIINSS EHWTSIRCVKGKWFNLDSLKAAPIHIDYFEVSKYLQEIMFSGKSVFVVQKIQNETDSHSI PLPDPDPFLRPIKNNGKQRFYLTASEIENLVLEKQKEENRVSQMGDETPNKNFMYSKKPV EYSWPTSGGNVLQSTLNNVDQSNEMTSEEKELQKVLRESAIEFAKSIPLPDEPPADHVNS IQIRVRSKVGSSFVRRFDKTNSCKHLFSWIEYEMALLGNSIHGSPYSFVSQFPYLKVSKF DENSIKISRSDISEMILNSPTFNDIGINENTLLLLNL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.10044267 SNEMTSEEKE0.99unspChro.10044279 SVLRESAIEF0.995unsp

Chro.10044      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India