Chro.10255 | AT hook motif protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.10255SP0.0331550.9650130.001832CS pos: 22-23. SVG-RI. Pr: 0.9312
No Results

  • Fasta :-

    >Chro.10255 MWINKLISVILQIIIAIKLSVGRITINVHNTKDENGYYFINVFVGNPPQKQTLILDSGSS QISFTCITCLNCGSHEYPPFDIMKSITGKNCNRKLLGGEKCKYFHRFNEGSVISGKYFSD TLRFEEVQQNSGIIKDHFEIKYDYLGCNELETKKIYRQRATGVFGIGLKSSLDEHANIIN SLLTSLESNINIKGSNNLVVSICLLHSGGRIVIEEHDEKITNRNSNFSENKRNHVYWVPI IYPSNVYKVSLEGLSIGSGKFSLLEEKTSLFAIIDVGSTYSFFPSNLYNKIINQFSKLCE LLNKLNINRCITINQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/93 Sequence name : 93 Sequence length : 315 VALUES OF COMPUTED PARAMETERS Coef20 : 4.712 CoefTot : -0.519 ChDiff : 6 ZoneTo : 32 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.359 2.306 0.266 0.723 MesoH : -0.285 0.427 -0.282 0.261 MuHd_075 : 31.333 19.184 8.652 6.354 MuHd_095 : 23.229 20.314 6.631 6.692 MuHd_100 : 21.835 24.152 8.212 7.427 MuHd_105 : 28.476 25.990 10.318 7.850 Hmax_075 : 18.433 24.500 5.119 7.607 Hmax_095 : 16.700 22.925 4.503 8.900 Hmax_100 : 21.400 30.800 6.449 9.500 Hmax_105 : 17.500 31.500 6.797 9.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6506 0.3494 DFMC : 0.8426 0.1574
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 315 Chro.10255 MWINKLISVILQIIIAIKLSVGRITINVHNTKDENGYYFINVFVGNPPQKQTLILDSGSSQISFTCITCLNCGSHEYPPF 80 DIMKSITGKNCNRKLLGGEKCKYFHRFNEGSVISGKYFSDTLRFEEVQQNSGIIKDHFEIKYDYLGCNELETKKIYRQRA 160 TGVFGIGLKSSLDEHANIINSLLTSLESNINIKGSNNLVVSICLLHSGGRIVIEEHDEKITNRNSNFSENKRNHVYWVPI 240 IYPSNVYKVSLEGLSIGSGKFSLLEEKTSLFAIIDVGSTYSFFPSNLYNKIINQFSKLCELLNKLNINRCITINQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.10255 5 --MWINK|LI 0.074 . Chro.10255 18 QIIIAIK|LS 0.055 . Chro.10255 23 IKLSVGR|IT 0.096 . Chro.10255 32 INVHNTK|DE 0.068 . Chro.10255 50 VGNPPQK|QT 0.067 . Chro.10255 84 PPFDIMK|SI 0.097 . Chro.10255 89 MKSITGK|NC 0.081 . Chro.10255 93 TGKNCNR|KL 0.101 . Chro.10255 94 GKNCNRK|LL 0.114 . Chro.10255 100 KLLGGEK|CK 0.056 . Chro.10255 102 LGGEKCK|YF 0.072 . Chro.10255 106 KCKYFHR|FN 0.130 . Chro.10255 116 GSVISGK|YF 0.094 . Chro.10255 123 YFSDTLR|FE 0.122 . Chro.10255 135 QNSGIIK|DH 0.082 . Chro.10255 141 KDHFEIK|YD 0.070 . Chro.10255 153 CNELETK|KI 0.066 . Chro.10255 154 NELETKK|IY 0.078 . Chro.10255 157 ETKKIYR|QR 0.098 . Chro.10255 159 KKIYRQR|AT 0.144 . Chro.10255 169 VFGIGLK|SS 0.064 . Chro.10255 193 ESNINIK|GS 0.069 . Chro.10255 210 LLHSGGR|IV 0.112 . Chro.10255 219 IEEHDEK|IT 0.059 . Chro.10255 223 DEKITNR|NS 0.088 . Chro.10255 231 SNFSENK|RN 0.060 . Chro.10255 232 NFSENKR|NH 0.135 . Chro.10255 248 YPSNVYK|VS 0.083 . Chro.10255 260 LSIGSGK|FS 0.080 . Chro.10255 267 FSLLEEK|TS 0.054 . Chro.10255 290 PSNLYNK|II 0.064 . Chro.10255 297 IINQFSK|LC 0.064 . Chro.10255 304 LCELLNK|LN 0.056 . Chro.10255 309 NKLNINR|CI 0.091 . ____________________________^_________________

  • Fasta :-

    >Chro.10255 ATGTGGATCAACAAGTTAATAAGTGTGATACTTCAAATAATAATTGCGATTAAGCTATCA GTTGGACGCATTACAATTAATGTTCACAATACAAAGGATGAAAATGGATATTATTTTATT AATGTTTTTGTTGGGAATCCGCCTCAAAAGCAAACTCTTATACTTGATTCTGGCAGCTCC CAAATTAGTTTTACATGTATAACATGCCTAAATTGCGGTTCCCACGAATATCCCCCGTTT GATATAATGAAATCAATAACTGGAAAGAATTGTAATAGAAAATTACTAGGAGGTGAAAAA TGTAAATATTTCCATCGTTTCAATGAAGGAAGTGTTATTTCCGGGAAATATTTTTCTGAT ACTTTAAGGTTTGAAGAAGTCCAACAAAATTCTGGAATTATTAAGGATCACTTTGAAATT AAATATGATTATTTAGGTTGTAATGAGCTAGAAACTAAAAAAATTTACCGTCAACGCGCA ACTGGAGTATTTGGTATTGGGCTAAAATCAAGTTTGGATGAACATGCAAACATTATTAAT TCTTTATTAACTTCTTTAGAAAGTAATATAAATATAAAAGGCTCTAATAATCTTGTTGTT TCAATTTGCCTATTGCACTCAGGTGGAAGGATTGTAATTGAGGAACATGATGAAAAAATA ACCAATAGGAATTCAAATTTTTCAGAAAATAAACGCAATCATGTTTATTGGGTTCCAATT ATTTACCCATCGAATGTATATAAAGTGAGTTTGGAAGGGCTATCAATTGGAAGTGGAAAA TTCAGTTTATTGGAAGAAAAAACATCTCTTTTTGCTATTATTGATGTAGGTTCAACCTAT TCGTTTTTCCCGTCTAATTTATACAACAAAATAATCAATCAATTCTCTAAACTCTGTGAA TTGCTGAATAAACTCAATATTAACAGATGTATTACAATTAATCAATAA
  • Download Fasta

  • Fasta :-

    MWINKLISVILQIIIAIKLSVGRITINVHNTKDENGYYFINVFVGNPPQKQTLILDSGSS QISFTCITCLNCGSHEYPPFDIMKSITGKNCNRKLLGGEKCKYFHRFNEGSVISGKYFSD TLRFEEVQQNSGIIKDHFEIKYDYLGCNELETKKIYRQRATGVFGIGLKSSLDEHANIIN SLLTSLESNINIKGSNNLVVSICLLHSGGRIVIEEHDEKITNRNSNFSENKRNHVYWVPI IYPSNVYKVSLEGLSIGSGKFSLLEEKTSLFAIIDVGSTYSFFPSNLYNKIINQFSKLCE LLNKLNINRCITINQ

  • title: inhibitor binding site
  • coordinates: D56,G58,S60,F104,H105,R106,V163
No Results
No Results
No Results

Chro.10255      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India