Chro.10279 | proteasome subunit beta type 1 (20S proteasome alpha subunit F) (20S proteasome subunit beta-6)

_IDPredictionOTHERSPmTPCS_Position
Chro.10279OTHER0.9990630.0004730.000463
No Results

  • Fasta :-

    >Chro.10279 MYSLTKNRDPIQIEGFCGQLISETEKKSYNGKIEHNFNPYMNNGGSCVAVAGDDFVVIAA DTRLSKMYRIASRSVSKTCQLTNKCILACSGMLADINALRKTLLVSF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/738 Sequence name : 738 Sequence length : 107 VALUES OF COMPUTED PARAMETERS Coef20 : 3.405 CoefTot : -0.035 ChDiff : 4 ZoneTo : 8 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.635 1.459 0.171 0.543 MesoH : -0.761 0.355 -0.328 0.105 MuHd_075 : 13.905 2.801 1.063 2.468 MuHd_095 : 7.181 7.832 1.567 0.575 MuHd_100 : 4.659 2.996 0.930 0.622 MuHd_105 : 7.056 7.351 3.117 1.701 Hmax_075 : -0.200 1.600 -1.103 1.505 Hmax_095 : -0.525 4.600 -1.090 1.760 Hmax_100 : -2.600 1.400 -2.063 1.760 Hmax_105 : 0.467 5.300 -0.422 2.390 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9836 0.0164 DFMC : 0.9869 0.0131
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 107 Chro.10279 MYSLTKNRDPIQIEGFCGQLISETEKKSYNGKIEHNFNPYMNNGGSCVAVAGDDFVVIAADTRLSKMYRIASRSVSKTCQ 80 LTNKCILACSGMLADINALRKTLLVSF 160 ................................................................................ 80 ........................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.10279 6 -MYSLTK|NR 0.061 . Chro.10279 8 YSLTKNR|DP 0.130 . Chro.10279 26 LISETEK|KS 0.067 . Chro.10279 27 ISETEKK|SY 0.184 . Chro.10279 32 KKSYNGK|IE 0.073 . Chro.10279 63 VIAADTR|LS 0.072 . Chro.10279 66 ADTRLSK|MY 0.112 . Chro.10279 69 RLSKMYR|IA 0.170 . Chro.10279 73 MYRIASR|SV 0.220 . Chro.10279 77 ASRSVSK|TC 0.061 . Chro.10279 84 TCQLTNK|CI 0.070 . Chro.10279 100 ADINALR|KT 0.070 . Chro.10279 101 DINALRK|TL 0.074 . ____________________________^_________________

  • Fasta :-

    >Chro.10279 ATGTATTCCTTAACTAAAAATAGAGATCCTATACAAATTGAGGGGTTTTGTGGTCAACTC ATTTCTGAGACAGAAAAAAAAAGCTATAACGGCAAAATTGAACATAACTTTAACCCTTAT ATGAATAACGGTGGTTCATGCGTAGCCGTAGCAGGGGATGATTTTGTTGTAATCGCCGCA GATACAAGACTCAGTAAAATGTATAGAATAGCCTCAAGATCAGTTTCTAAAACTTGTCAA TTAACAAATAAGTGTATCTTAGCTTGTAGTGGAATGCTTGCAGATATAAATGCACTTAGG AAGACTTTATTAGTAAGTTTCTAA
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  • Fasta :-

    MYSLTKNRDPIQIEGFCGQLISETEKKSYNGKIEHNFNPYMNNGGSCVAVAGDDFVVIAA DTRLSKMYRIASRSVSKTCQLTNKCILACSGMLADINALRKTLLVSF

  • title: active site
  • coordinates: G45,D61,R63,K77
No Results
No Results
IDSitePeptideScoreMethod
Chro.1027976 SSRSVSKTCQ0.993unsp

Chro.10279      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India