Chro.20081 | hypothetical protein

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
Chro.20081OTHER0.9999310.0000140.000055
No Results

  • Fasta :-

    >Chro.20081 MNGELNKTQYNTNIKTKNADYFDQMENISGSNVRGRLTYSDLHVKDSFSHVYSNNNITRC SSNYREENFDRDSGSNMVILNVYDLDAISGSINRFTRVFELGAFHAGIEIYGVEYCFGST SDGSSGITVNLPRRHPIHIYRESVKMGRTNYSRGEIKRIINEMKPLWLGSDYNIFRRNCL TFADELCMVLNVGQIPNYVKLLPELLCQAGDGLDKVTKHISTIFDRIASNCSNLAIVESE QEEKNDQSTTNSSGMSPKKFPFGIKNPLL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/495 Sequence name : 495 Sequence length : 269 VALUES OF COMPUTED PARAMETERS Coef20 : 3.185 CoefTot : -1.541 ChDiff : -1 ZoneTo : 19 KR : 3 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.459 1.218 0.015 0.530 MesoH : -0.760 0.294 -0.377 0.177 MuHd_075 : 13.673 15.297 5.352 4.907 MuHd_095 : 17.352 7.328 4.271 1.667 MuHd_100 : 17.859 6.824 4.166 1.409 MuHd_105 : 15.599 5.417 3.259 1.174 Hmax_075 : -7.117 1.633 -3.891 1.283 Hmax_095 : -2.500 -3.400 -3.746 0.000 Hmax_100 : 0.900 -3.400 -3.161 -0.040 Hmax_105 : -8.487 -6.600 -5.387 -1.365 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9891 0.0109 DFMC : 0.9851 0.0149
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 269 Chro.20081 MNGELNKTQYNTNIKTKNADYFDQMENISGSNVRGRLTYSDLHVKDSFSHVYSNNNITRCSSNYREENFDRDSGSNMVIL 80 NVYDLDAISGSINRFTRVFELGAFHAGIEIYGVEYCFGSTSDGSSGITVNLPRRHPIHIYRESVKMGRTNYSRGEIKRII 160 NEMKPLWLGSDYNIFRRNCLTFADELCMVLNVGQIPNYVKLLPELLCQAGDGLDKVTKHISTIFDRIASNCSNLAIVESE 240 QEEKNDQSTTNSSGMSPKKFPFGIKNPLL 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.20081 7 MNGELNK|TQ 0.056 . Chro.20081 15 QYNTNIK|TK 0.061 . Chro.20081 17 NTNIKTK|NA 0.087 . Chro.20081 34 ISGSNVR|GR 0.084 . Chro.20081 36 GSNVRGR|LT 0.131 . Chro.20081 45 YSDLHVK|DS 0.065 . Chro.20081 59 SNNNITR|CS 0.125 . Chro.20081 65 RCSSNYR|EE 0.086 . Chro.20081 71 REENFDR|DS 0.130 . Chro.20081 94 ISGSINR|FT 0.101 . Chro.20081 97 SINRFTR|VF 0.347 . Chro.20081 133 ITVNLPR|RH 0.071 . Chro.20081 134 TVNLPRR|HP 0.139 . Chro.20081 141 HPIHIYR|ES 0.113 . Chro.20081 145 IYRESVK|MG 0.066 . Chro.20081 148 ESVKMGR|TN 0.080 . Chro.20081 153 GRTNYSR|GE 0.089 . Chro.20081 157 YSRGEIK|RI 0.067 . Chro.20081 158 SRGEIKR|II 0.256 . Chro.20081 164 RIINEMK|PL 0.070 . Chro.20081 176 SDYNIFR|RN 0.081 . Chro.20081 177 DYNIFRR|NC 0.106 . Chro.20081 200 QIPNYVK|LL 0.060 . Chro.20081 215 AGDGLDK|VT 0.058 . Chro.20081 218 GLDKVTK|HI 0.094 . Chro.20081 226 ISTIFDR|IA 0.097 . Chro.20081 244 ESEQEEK|ND 0.057 . Chro.20081 258 SSGMSPK|KF 0.075 . Chro.20081 259 SGMSPKK|FP 0.117 . Chro.20081 265 KFPFGIK|NP 0.054 . ____________________________^_________________

  • Fasta :-

    >Chro.20081 ATGAATGGAGAATTGAATAAAACCCAATATAATACAAATATAAAAACAAAGAATGCAGAT TATTTTGACCAAATGGAGAATATTTCAGGATCAAATGTAAGAGGACGCTTGACTTACTCT GATTTACATGTAAAGGATAGCTTTTCGCATGTATATAGTAATAATAATATTACCAGATGT TCATCAAATTATAGAGAAGAAAACTTTGACAGAGATTCTGGTAGCAACATGGTAATTCTT AATGTATATGATTTAGATGCAATTAGTGGAAGTATTAATAGATTTACAAGAGTATTCGAA TTGGGAGCTTTTCATGCAGGAATTGAAATTTATGGAGTAGAATACTGTTTTGGATCAACT AGTGATGGAAGTAGTGGCATCACAGTAAATCTTCCAAGAAGGCATCCAATACATATCTAT AGAGAAAGTGTTAAAATGGGTAGAACTAACTATTCTAGGGGAGAAATTAAGAGAATTATT AACGAAATGAAACCTTTATGGCTTGGTTCAGATTATAATATATTCAGGAGAAATTGTTTA ACTTTTGCTGACGAACTTTGTATGGTCCTAAATGTTGGACAAATTCCAAATTATGTCAAA CTTCTCCCTGAACTTCTTTGTCAAGCTGGAGATGGACTCGACAAAGTCACCAAACATATT TCAACAATTTTTGACCGTATTGCCTCTAACTGTTCTAATCTTGCAATCGTTGAAAGCGAA CAAGAAGAAAAAAATGATCAATCAACGACTAATTCCTCAGGAATGTCACCCAAAAAATTT CCTTTTGGAATTAAAAATCCCCTTTTATAA
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  • Fasta :-

    MNGELNKTQYNTNIKTKNADYFDQMENISGSNVRGRLTYSDLHVKDSFSHVYSNNNITRC SSNYREENFDRDSGSNMVILNVYDLDAISGSINRFTRVFELGAFHAGIEIYGVEYCFGST SDGSSGITVNLPRRHPIHIYRESVKMGRTNYSRGEIKRIINEMKPLWLGSDYNIFRRNCL TFADELCMVLNVGQIPNYVKLLPELLCQAGDGLDKVTKHISTIFDRIASNCSNLAIVESE QEEKNDQSTTNSSGMSPKKFPFGIKNPLL

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.2008162 STRCSSNYRE0.991unspChro.20081256 SSSGMSPKKF0.995unsp

Chro.20081      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India