Chro.20097 | proteasome B type subunit

_IDPredictionOTHERSPmTPCS_Position
Chro.20097OTHER0.9999170.0000330.000050
No Results

  • Fasta :-

    >Chro.20097 MELDFLNGEIETGTTIVALKYKHGLVLAADGRTSTGPIIAFRAARKITQITDKVFMCRSG SAADTQIISRYVRRIVQDHELETGEDTKVKSVASVARLISYQNKEHLLADMIIAGMDPNG EFKVFRIPLGGTLIEGSYAISGSGSGYIYSMLDSKYHSEMDLDECKSFARDLVSHAMFRD SSSGGIIRIIVIDKSGVEEFVVPGEDVPNL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/724 Sequence name : 724 Sequence length : 210 VALUES OF COMPUTED PARAMETERS Coef20 : 3.543 CoefTot : 0.000 ChDiff : -6 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.112 1.294 0.109 0.470 MesoH : -0.640 0.198 -0.365 0.198 MuHd_075 : 7.447 7.075 1.425 1.402 MuHd_095 : 11.270 12.924 3.126 3.835 MuHd_100 : 9.935 14.124 3.656 3.796 MuHd_105 : 9.838 14.297 4.280 3.513 Hmax_075 : 17.967 13.533 2.323 4.947 Hmax_095 : 6.825 11.813 0.735 4.384 Hmax_100 : 9.300 13.900 1.134 4.490 Hmax_105 : 17.967 23.800 4.747 7.677 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9859 0.0141 DFMC : 0.9888 0.0112
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 210 Chro.20097 MELDFLNGEIETGTTIVALKYKHGLVLAADGRTSTGPIIAFRAARKITQITDKVFMCRSGSAADTQIISRYVRRIVQDHE 80 LETGEDTKVKSVASVARLISYQNKEHLLADMIIAGMDPNGEFKVFRIPLGGTLIEGSYAISGSGSGYIYSMLDSKYHSEM 160 DLDECKSFARDLVSHAMFRDSSSGGIIRIIVIDKSGVEEFVVPGEDVPNL 240 ................................................................................ 80 ................................................................................ 160 .................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.20097 20 TTIVALK|YK 0.066 . Chro.20097 22 IVALKYK|HG 0.060 . Chro.20097 32 VLAADGR|TS 0.077 . Chro.20097 42 GPIIAFR|AA 0.141 . Chro.20097 45 IAFRAAR|KI 0.406 . Chro.20097 46 AFRAARK|IT 0.086 . Chro.20097 53 ITQITDK|VF 0.058 . Chro.20097 58 DKVFMCR|SG 0.162 . Chro.20097 70 DTQIISR|YV 0.123 . Chro.20097 73 IISRYVR|RI 0.248 . Chro.20097 74 ISRYVRR|IV 0.351 . Chro.20097 88 ETGEDTK|VK 0.059 . Chro.20097 90 GEDTKVK|SV 0.111 . Chro.20097 97 SVASVAR|LI 0.142 . Chro.20097 104 LISYQNK|EH 0.066 . Chro.20097 123 DPNGEFK|VF 0.066 . Chro.20097 126 GEFKVFR|IP 0.096 . Chro.20097 155 YSMLDSK|YH 0.068 . Chro.20097 166 MDLDECK|SF 0.072 . Chro.20097 170 ECKSFAR|DL 0.103 . Chro.20097 179 VSHAMFR|DS 0.165 . Chro.20097 188 SSGGIIR|II 0.091 . Chro.20097 194 RIIVIDK|SG 0.072 . ____________________________^_________________

  • Fasta :-

    >Chro.20097 ATGGAACTGGATTTTTTGAATGGAGAAATTGAAACAGGAACCACAATTGTGGCATTGAAA TACAAGCACGGGTTGGTTCTAGCAGCAGATGGAAGAACCTCCACTGGACCAATTATTGCT TTTAGAGCAGCAAGGAAGATAACTCAAATTACTGATAAAGTATTTATGTGCCGTTCTGGA TCTGCAGCAGACACCCAAATTATTTCTAGATATGTACGCCGAATTGTTCAGGATCACGAG CTTGAGACTGGCGAAGATACAAAAGTGAAGTCTGTCGCTTCTGTTGCCAGATTGATATCA TATCAAAATAAAGAACACTTATTAGCAGATATGATCATTGCAGGAATGGATCCAAATGGT GAATTTAAAGTTTTCAGGATTCCATTGGGGGGAACTTTGATTGAAGGTTCATATGCAATA TCAGGATCAGGATCAGGCTATATTTACTCTATGTTAGACTCTAAGTACCATTCAGAAATG GACCTTGATGAATGTAAATCTTTTGCTAGGGATTTAGTTTCCCACGCTATGTTCAGGGAC TCTTCTTCTGGTGGTATTATCAGAATTATAGTCATTGACAAGAGTGGAGTGGAGGAATTT GTAGTTCCTGGAGAAGACGTTCCTAACCTATAA
  • Download Fasta

  • Fasta :-

    MELDFLNGEIETGTTIVALKYKHGLVLAADGRTSTGPIIAFRAARKITQITDKVFMCRSG SAADTQIISRYVRRIVQDHELETGEDTKVKSVASVARLISYQNKEHLLADMIIAGMDPNG EFKVFRIPLGGTLIEGSYAISGSGSGYIYSMLDSKYHSEMDLDECKSFARDLVSHAMFRD SSSGGIIRIIVIDKSGVEEFVVPGEDVPNL

  • title: active site
  • coordinates: T14,D30,R32,K46,S143,D180,S183,G184
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.20097195 SVIDKSGVEE0.99unspChro.20097195 SVIDKSGVEE0.99unspChro.20097195 SVIDKSGVEE0.99unspChro.2009761 SCRSGSAADT0.992unspChro.20097158 SSKYHSEMDL0.997unsp

Chro.20097      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India