Chro.20348 | P3ECSL-related

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.20348SP0.0447950.9532410.001964CS pos: 32-33. ISS-DL. Pr: 0.9606
No Results

  • Fasta :-

    >Chro.20348 MGRFKSRFHISLRRKWTLFCWFFSILIREISSDLPPNCIHGDVVGTWRIHVGTYKPCPSD QKFEDPTCGFPSPDRDFAHSMLTPTERGLMNNNFKLSFTFDVKFEGSELKVISTQNLDGV DTGKFNDFEKVGTTGNWTVILDQAFTFWTKSYRYTAFFKYINEHEDINASYCYCHTTLLG WWDSYPESVISNQDNKEENKILSLEERSKYHNYPWLVMSEDLKLRRGCWYGMRIFDGDGK MTDRTEWTLKLPRWRSSPLGLPPDHPVNAQNPTIAEYLNEVSAKYSEFDSKNKLWSRSNK FEIGDIQNLDTLPKVRKALKISPHFVQRKKSNDEYITEISSVREEEQISGSKNNTDEPIW MRIRSFDWTNLQHVYGRLGKKVGLVPEVFNQGDCGDCFAVTAATIITSRLWIKYSNEPDI LRKIYASSIQMSECNVYNQGCGGGLITLAFKFAQEVGVRTQDCIDDYAKNLGLKEIYPTP VYTPDEVGIADDGHSFLQTKKGKKFESKKSKIKEIKQQGEDSQEYGQEHKQEHKQGHEQE HDQEHEQEHEQEHEQEHEQEHDQEYEQEQGQEHDQEYQDDYKDMEEHLEGSDSAEHISNV HDYYDDSDDENSSDNEELGDLSGAKHNIPKRFNVIQQLCWDLGGHMGAANTQCRKEIPIT KNIPKSCSKIIKVKEYSYVNNVYGKTTARDIMESLWNEGPVAVSLEPTLEFSLYNSGIFK GFYDPITRQYPWSSIPWHKVDHAMVITGWGWETYGNERIPYWIVQNSWGKRWGEKGFCRI IRGVNELSIEHAAVRASVKIYDSDRKYKAADLQKVHDDSVFQYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/760 Sequence name : 760 Sequence length : 824 VALUES OF COMPUTED PARAMETERS Coef20 : 4.976 CoefTot : 0.662 ChDiff : -30 ZoneTo : 28 KR : 7 DE : 0 CleavSite : 38 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.841 1.235 0.169 0.484 MesoH : -0.538 0.267 -0.299 0.213 MuHd_075 : 33.992 13.625 5.879 7.998 MuHd_095 : 27.176 16.273 4.719 6.834 MuHd_100 : 30.748 19.663 6.215 8.402 MuHd_105 : 25.776 17.231 5.673 7.357 Hmax_075 : 17.400 13.500 0.811 6.370 Hmax_095 : 8.400 13.825 0.447 3.605 Hmax_100 : 20.000 19.300 4.002 7.100 Hmax_105 : 21.700 17.617 1.927 7.712 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0923 0.9077 DFMC : 0.1394 0.8606 This protein is probably imported in mitochondria. f(Ser) = 0.1071 f(Arg) = 0.1786 CMi = 0.33482 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 824 Chro.20348 MGRFKSRFHISLRRKWTLFCWFFSILIREISSDLPPNCIHGDVVGTWRIHVGTYKPCPSDQKFEDPTCGFPSPDRDFAHS 80 MLTPTERGLMNNNFKLSFTFDVKFEGSELKVISTQNLDGVDTGKFNDFEKVGTTGNWTVILDQAFTFWTKSYRYTAFFKY 160 INEHEDINASYCYCHTTLLGWWDSYPESVISNQDNKEENKILSLEERSKYHNYPWLVMSEDLKLRRGCWYGMRIFDGDGK 240 MTDRTEWTLKLPRWRSSPLGLPPDHPVNAQNPTIAEYLNEVSAKYSEFDSKNKLWSRSNKFEIGDIQNLDTLPKVRKALK 320 ISPHFVQRKKSNDEYITEISSVREEEQISGSKNNTDEPIWMRIRSFDWTNLQHVYGRLGKKVGLVPEVFNQGDCGDCFAV 400 TAATIITSRLWIKYSNEPDILRKIYASSIQMSECNVYNQGCGGGLITLAFKFAQEVGVRTQDCIDDYAKNLGLKEIYPTP 480 VYTPDEVGIADDGHSFLQTKKGKKFESKKSKIKEIKQQGEDSQEYGQEHKQEHKQGHEQEHDQEHEQEHEQEHEQEHEQE 560 HDQEYEQEQGQEHDQEYQDDYKDMEEHLEGSDSAEHISNVHDYYDDSDDENSSDNEELGDLSGAKHNIPKRFNVIQQLCW 640 DLGGHMGAANTQCRKEIPITKNIPKSCSKIIKVKEYSYVNNVYGKTTARDIMESLWNEGPVAVSLEPTLEFSLYNSGIFK 720 GFYDPITRQYPWSSIPWHKVDHAMVITGWGWETYGNERIPYWIVQNSWGKRWGEKGFCRIIRGVNELSIEHAAVRASVKI 800 YDSDRKYKAADLQKVHDDSVFQYL 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ........................ 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.20348 3 ----MGR|FK 0.100 . Chro.20348 5 --MGRFK|SR 0.072 . Chro.20348 7 MGRFKSR|FH 0.107 . Chro.20348 13 RFHISLR|RK 0.091 . Chro.20348 14 FHISLRR|KW 0.087 . Chro.20348 15 HISLRRK|WT 0.085 . Chro.20348 28 FFSILIR|EI 0.102 . Chro.20348 48 DVVGTWR|IH 0.065 . Chro.20348 55 IHVGTYK|PC 0.061 . Chro.20348 62 PCPSDQK|FE 0.057 . Chro.20348 75 GFPSPDR|DF 0.096 . Chro.20348 87 MLTPTER|GL 0.092 . Chro.20348 95 LMNNNFK|LS 0.067 . Chro.20348 103 SFTFDVK|FE 0.067 . Chro.20348 110 FEGSELK|VI 0.067 . Chro.20348 124 DGVDTGK|FN 0.069 . Chro.20348 130 KFNDFEK|VG 0.068 . Chro.20348 150 AFTFWTK|SY 0.063 . Chro.20348 153 FWTKSYR|YT 0.082 . Chro.20348 159 RYTAFFK|YI 0.076 . Chro.20348 196 ISNQDNK|EE 0.069 . Chro.20348 200 DNKEENK|IL 0.070 . Chro.20348 207 ILSLEER|SK 0.176 . Chro.20348 209 SLEERSK|YH 0.058 . Chro.20348 223 VMSEDLK|LR 0.058 . Chro.20348 225 SEDLKLR|RG 0.078 . Chro.20348 226 EDLKLRR|GC 0.137 . Chro.20348 233 GCWYGMR|IF 0.092 . Chro.20348 240 IFDGDGK|MT 0.068 . Chro.20348 244 DGKMTDR|TE 0.069 . Chro.20348 250 RTEWTLK|LP 0.053 . Chro.20348 253 WTLKLPR|WR 0.075 . Chro.20348 255 LKLPRWR|SS 0.120 . Chro.20348 284 LNEVSAK|YS 0.078 . Chro.20348 291 YSEFDSK|NK 0.062 . Chro.20348 293 EFDSKNK|LW 0.063 . Chro.20348 297 KNKLWSR|SN 0.121 . Chro.20348 300 LWSRSNK|FE 0.206 . Chro.20348 314 NLDTLPK|VR 0.053 . Chro.20348 316 DTLPKVR|KA 0.095 . Chro.20348 317 TLPKVRK|AL 0.103 . Chro.20348 320 KVRKALK|IS 0.058 . Chro.20348 328 SPHFVQR|KK 0.126 . Chro.20348 329 PHFVQRK|KS 0.096 . Chro.20348 330 HFVQRKK|SN 0.177 . Chro.20348 343 TEISSVR|EE 0.092 . Chro.20348 352 EQISGSK|NN 0.059 . Chro.20348 362 DEPIWMR|IR 0.071 . Chro.20348 364 PIWMRIR|SF 0.119 . Chro.20348 377 LQHVYGR|LG 0.097 . Chro.20348 380 VYGRLGK|KV 0.185 . Chro.20348 381 YGRLGKK|VG 0.070 . Chro.20348 409 ATIITSR|LW 0.076 . Chro.20348 413 TSRLWIK|YS 0.065 . Chro.20348 422 NEPDILR|KI 0.078 . Chro.20348 423 EPDILRK|IY 0.082 . Chro.20348 451 LITLAFK|FA 0.069 . Chro.20348 459 AQEVGVR|TQ 0.076 . Chro.20348 469 CIDDYAK|NL 0.066 . Chro.20348 474 AKNLGLK|EI 0.064 . Chro.20348 500 HSFLQTK|KG 0.061 . Chro.20348 501 SFLQTKK|GK 0.075 . Chro.20348 503 LQTKKGK|KF 0.069 . Chro.20348 504 QTKKGKK|FE 0.100 . Chro.20348 508 GKKFESK|KS 0.069 . Chro.20348 509 KKFESKK|SK 0.216 . Chro.20348 511 FESKKSK|IK 0.105 . Chro.20348 513 SKKSKIK|EI 0.086 . Chro.20348 516 SKIKEIK|QQ 0.070 . Chro.20348 530 EYGQEHK|QE 0.068 . Chro.20348 534 EHKQEHK|QG 0.072 . Chro.20348 582 EYQDDYK|DM 0.074 . Chro.20348 625 GDLSGAK|HN 0.068 . Chro.20348 630 AKHNIPK|RF 0.070 . Chro.20348 631 KHNIPKR|FN 0.278 . Chro.20348 654 AANTQCR|KE 0.102 . Chro.20348 655 ANTQCRK|EI 0.069 . Chro.20348 661 KEIPITK|NI 0.060 . Chro.20348 665 ITKNIPK|SC 0.112 . Chro.20348 669 IPKSCSK|II 0.069 . Chro.20348 672 SCSKIIK|VK 0.076 . Chro.20348 674 SKIIKVK|EY 0.078 . Chro.20348 685 VNNVYGK|TT 0.071 . Chro.20348 689 YGKTTAR|DI 0.152 . Chro.20348 720 YNSGIFK|GF 0.072 . Chro.20348 728 FYDPITR|QY 0.063 . Chro.20348 739 SSIPWHK|VD 0.073 . Chro.20348 758 ETYGNER|IP 0.075 . Chro.20348 770 VQNSWGK|RW 0.074 . Chro.20348 771 QNSWGKR|WG 0.351 . Chro.20348 775 GKRWGEK|GF 0.090 . Chro.20348 779 GEKGFCR|II 0.114 . Chro.20348 782 GFCRIIR|GV 0.329 . Chro.20348 795 IEHAAVR|AS 0.096 . Chro.20348 799 AVRASVK|IY 0.067 . Chro.20348 805 KIYDSDR|KY 0.088 . Chro.20348 806 IYDSDRK|YK 0.074 . Chro.20348 808 DSDRKYK|AA 0.209 . Chro.20348 814 KAADLQK|VH 0.070 . ____________________________^_________________

  • Fasta :-

    >Chro.20348 ATGGGAAGATTTAAATCAAGATTTCATATCAGTTTGCGAAGGAAATGGACTTTATTTTGT TGGTTTTTTTCAATCCTAATTAGAGAAATATCAAGTGATTTACCACCAAATTGTATTCAT GGCGATGTGGTTGGTACATGGAGAATTCATGTGGGAACTTATAAGCCATGTCCTTCAGAT CAAAAATTTGAAGATCCAACTTGTGGATTTCCATCTCCAGATAGGGATTTTGCGCATAGT ATGTTAACACCAACAGAGAGAGGATTGATGAACAATAATTTTAAACTTTCGTTTACATTT GATGTAAAATTTGAAGGTAGTGAATTGAAGGTTATTTCAACCCAGAACTTGGATGGCGTT GATACAGGAAAGTTTAATGATTTTGAAAAAGTTGGTACAACGGGTAACTGGACAGTAATA TTAGATCAAGCTTTCACATTTTGGACAAAATCATATAGATATACAGCGTTCTTCAAGTAT ATTAATGAACATGAAGATATTAATGCATCATATTGCTATTGCCACACAACTCTTCTAGGA TGGTGGGATTCGTATCCTGAGAGTGTAATTTCCAATCAAGATAATAAAGAAGAGAATAAG ATATTATCACTTGAAGAAAGAAGTAAGTACCATAATTATCCTTGGCTGGTTATGAGTGAA GATTTAAAGCTTAGAAGAGGCTGTTGGTATGGAATGAGGATATTTGATGGGGATGGTAAG ATGACAGATAGAACAGAATGGACTTTGAAGCTTCCAAGATGGAGATCATCACCTTTGGGA TTACCTCCAGATCACCCAGTTAACGCACAAAATCCAACAATTGCTGAGTATTTAAATGAA GTATCAGCAAAATATTCAGAATTTGATAGTAAGAATAAATTATGGAGTAGAAGTAATAAA TTTGAGATAGGAGATATTCAGAATTTGGATACATTACCAAAAGTAAGAAAAGCATTGAAA ATTTCTCCACATTTTGTTCAAAGAAAAAAGTCAAATGATGAGTATATTACAGAAATATCA AGTGTTAGGGAAGAAGAGCAGATTTCTGGTTCTAAAAATAACACTGATGAACCAATTTGG ATGAGAATTAGGTCATTTGATTGGACAAATCTTCAGCATGTTTATGGAAGATTAGGAAAG AAGGTAGGATTAGTTCCTGAAGTGTTTAATCAAGGAGATTGCGGAGATTGTTTTGCAGTA ACAGCAGCTACAATAATTACGTCTCGTTTGTGGATTAAATATTCAAATGAGCCTGATATA CTTAGAAAAATCTATGCATCATCAATACAGATGTCTGAATGTAATGTTTATAATCAAGGA TGCGGAGGTGGATTAATTACTCTTGCTTTTAAATTTGCTCAGGAAGTTGGCGTTAGAACG CAGGATTGTATAGATGATTATGCCAAAAATCTTGGGCTCAAGGAAATATATCCAACTCCT GTTTACACGCCAGATGAAGTTGGAATCGCGGATGATGGCCATAGTTTTCTGCAAACAAAA AAGGGAAAGAAGTTTGAAAGCAAAAAGTCTAAAATTAAGGAAATTAAGCAACAAGGGGAA GATAGTCAAGAGTATGGTCAAGAGCATAAACAAGAGCATAAACAAGGGCATGAACAAGAA CATGATCAAGAACATGAACAAGAGCATGAACAAGAGCATGAACAAGAGCATGAGCAGGAG CATGATCAAGAGTATGAACAAGAGCAAGGTCAAGAACACGATCAAGAGTACCAAGATGAT TATAAAGATATGGAAGAACACTTAGAAGGAAGTGATAGTGCGGAGCATATTTCAAATGTT CACGATTATTATGACGATTCTGATGATGAGAATTCATCAGATAATGAGGAATTGGGGGAT CTCAGTGGTGCAAAACATAATATTCCTAAAAGGTTTAATGTTATTCAACAATTATGTTGG GACTTAGGCGGACATATGGGCGCAGCAAATACTCAATGTAGGAAAGAGATCCCTATTACA AAAAACATTCCAAAGTCATGTTCAAAGATCATTAAGGTAAAAGAATACAGCTATGTCAAT AACGTTTATGGAAAAACTACTGCTCGTGATATTATGGAGTCATTATGGAATGAAGGACCT GTTGCAGTTAGTTTGGAGCCAACATTAGAATTTTCATTATATAATTCAGGAATATTTAAA GGTTTTTATGACCCTATTACACGACAATATCCTTGGTCAAGTATTCCTTGGCATAAAGTT GACCATGCAATGGTAATAACGGGATGGGGATGGGAAACTTATGGTAATGAAAGAATACCT TATTGGATTGTTCAAAATAGTTGGGGTAAACGTTGGGGCGAGAAAGGGTTCTGTAGGATA ATTAGAGGAGTAAATGAGTTATCAATTGAACATGCAGCAGTTAGAGCATCTGTTAAAATA TATGACAGTGATAGAAAGTATAAGGCGGCTGATTTGCAGAAGGTACATGATGACTCAGTA TTTCAATATTTATGA
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  • Fasta :-

    MGRFKSRFHISLRRKWTLFCWFFSILIREISSDLPPNCIHGDVVGTWRIHVGTYKPCPSD QKFEDPTCGFPSPDRDFAHSMLTPTERGLMNNNFKLSFTFDVKFEGSELKVISTQNLDGV DTGKFNDFEKVGTTGNWTVILDQAFTFWTKSYRYTAFFKYINEHEDINASYCYCHTTLLG WWDSYPESVISNQDNKEENKILSLEERSKYHNYPWLVMSEDLKLRRGCWYGMRIFDGDGK MTDRTEWTLKLPRWRSSPLGLPPDHPVNAQNPTIAEYLNEVSAKYSEFDSKNKLWSRSNK FEIGDIQNLDTLPKVRKALKISPHFVQRKKSNDEYITEISSVREEEQISGSKNNTDEPIW MRIRSFDWTNLQHVYGRLGKKVGLVPEVFNQGDCGDCFAVTAATIITSRLWIKYSNEPDI LRKIYASSIQMSECNVYNQGCGGGLITLAFKFAQEVGVRTQDCIDDYAKNLGLKEIYPTP VYTPDEVGIADDGHSFLQTKKGKKFESKKSKIKEIKQQGEDSQEYGQEHKQEHKQGHEQE HDQEHEQEHEQEHEQEHEQEHDQEYEQEQGQEHDQEYQDDYKDMEEHLEGSDSAEHISNV HDYYDDSDDENSSDNEELGDLSGAKHNIPKRFNVIQQLCWDLGGHMGAANTQCRKEIPIT KNIPKSCSKIIKVKEYSYVNNVYGKTTARDIMESLWNEGPVAVSLEPTLEFSLYNSGIFK GFYDPITRQYPWSSIPWHKVDHAMVITGWGWETYGNERIPYWIVQNSWGKRWGEKGFCRI IRGVNELSIEHAAVRASVKIYDSDRKYKAADLQKVHDDSVFQYL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.20348797 SAVRASVKIY0.993unspChro.20348797 SAVRASVKIY0.993unspChro.20348797 SAVRASVKIY0.993unspChro.20348331 SQRKKSNDEY0.993unspChro.20348341 STEISSVREE0.997unsp

Chro.20348      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India