Chro.30101 | RIKEN cDNA 1110065L07

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
Chro.30101OTHER0.9996360.0001150.000248
No Results

  • Fasta :-

    >Chro.30101 MDLKLEFLNKTENRTTGCSAQCIFGKIILLIASIILLLGLLVWIFQEKLLFFPNINGKRD LASNFPGYRHPNENKMNSEDVVLTTDDNVKLYCWFIIHKKFDRYSHEQSSAMHISSNLSE PHHLEQVKKDSPRKKILDKIRKAPKYMKFHFPEFSDRYEQQEKAPTIVFFHGNAGNIGHR LPRFLEFYNLIGVNIFAVSYRGYGDSEGTPSEEGFYLDAKASLEYVLSRTDVVDKNMIFL YGHSIGGAVAIDLASKYDVTGVILENTFTNIKSVAFRVYPIFKYFGFFFKFIQRLKFDSV SKISRVKSPILFVVGNEDEIIPPTHSVELYMKAGSPKSLNKIYLVSGGSHNDTWIKGGME FYLMLLQFIYNAIDYNKLELEVSSNNLINKNQEETLFSIQEILKTKESSPISKLRKKTN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/205 Sequence name : 205 Sequence length : 419 VALUES OF COMPUTED PARAMETERS Coef20 : 3.895 CoefTot : 0.000 ChDiff : 7 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.553 3.118 0.551 1.031 MesoH : -0.347 0.606 -0.327 0.297 MuHd_075 : 14.347 7.347 3.632 4.840 MuHd_095 : 27.677 13.519 6.728 4.084 MuHd_100 : 25.602 14.730 7.275 3.514 MuHd_105 : 19.976 13.698 6.724 2.773 Hmax_075 : -0.700 5.500 -0.791 2.650 Hmax_095 : 4.900 7.600 0.317 2.090 Hmax_100 : 5.500 5.700 -0.170 1.630 Hmax_105 : -5.950 1.900 -2.554 0.370 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9820 0.0180 DFMC : 0.9853 0.0147
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 419 Chro.30101 MDLKLEFLNKTENRTTGCSAQCIFGKIILLIASIILLLGLLVWIFQEKLLFFPNINGKRDLASNFPGYRHPNENKMNSED 80 VVLTTDDNVKLYCWFIIHKKFDRYSHEQSSAMHISSNLSEPHHLEQVKKDSPRKKILDKIRKAPKYMKFHFPEFSDRYEQ 160 QEKAPTIVFFHGNAGNIGHRLPRFLEFYNLIGVNIFAVSYRGYGDSEGTPSEEGFYLDAKASLEYVLSRTDVVDKNMIFL 240 YGHSIGGAVAIDLASKYDVTGVILENTFTNIKSVAFRVYPIFKYFGFFFKFIQRLKFDSVSKISRVKSPILFVVGNEDEI 320 IPPTHSVELYMKAGSPKSLNKIYLVSGGSHNDTWIKGGMEFYLMLLQFIYNAIDYNKLELEVSSNNLINKNQEETLFSIQ 400 EILKTKESSPISKLRKKTN 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30101 4 ---MDLK|LE 0.052 . Chro.30101 10 KLEFLNK|TE 0.058 . Chro.30101 14 LNKTENR|TT 0.117 . Chro.30101 26 AQCIFGK|II 0.065 . Chro.30101 48 VWIFQEK|LL 0.059 . Chro.30101 58 FPNINGK|RD 0.061 . Chro.30101 59 PNINGKR|DL 0.202 . Chro.30101 69 SNFPGYR|HP 0.077 . Chro.30101 75 RHPNENK|MN 0.065 . Chro.30101 90 TTDDNVK|LY 0.061 . Chro.30101 99 CWFIIHK|KF 0.059 . Chro.30101 100 WFIIHKK|FD 0.102 . Chro.30101 103 IHKKFDR|YS 0.138 . Chro.30101 128 HHLEQVK|KD 0.064 . Chro.30101 129 HLEQVKK|DS 0.112 . Chro.30101 133 VKKDSPR|KK 0.081 . Chro.30101 134 KKDSPRK|KI 0.085 . Chro.30101 135 KDSPRKK|IL 0.259 . Chro.30101 139 RKKILDK|IR 0.060 . Chro.30101 141 KILDKIR|KA 0.105 . Chro.30101 142 ILDKIRK|AP 0.073 . Chro.30101 145 KIRKAPK|YM 0.071 . Chro.30101 148 KAPKYMK|FH 0.070 . Chro.30101 157 FPEFSDR|YE 0.094 . Chro.30101 163 RYEQQEK|AP 0.065 . Chro.30101 180 AGNIGHR|LP 0.073 . Chro.30101 183 IGHRLPR|FL 0.357 . Chro.30101 201 IFAVSYR|GY 0.256 . Chro.30101 220 GFYLDAK|AS 0.060 . Chro.30101 229 LEYVLSR|TD 0.080 . Chro.30101 235 RTDVVDK|NM 0.058 . Chro.30101 256 AIDLASK|YD 0.059 . Chro.30101 272 NTFTNIK|SV 0.068 . Chro.30101 277 IKSVAFR|VY 0.093 . Chro.30101 283 RVYPIFK|YF 0.073 . Chro.30101 290 YFGFFFK|FI 0.071 . Chro.30101 294 FFKFIQR|LK 0.077 . Chro.30101 296 KFIQRLK|FD 0.065 . Chro.30101 302 KFDSVSK|IS 0.058 . Chro.30101 305 SVSKISR|VK 0.130 . Chro.30101 307 SKISRVK|SP 0.069 . Chro.30101 332 SVELYMK|AG 0.063 . Chro.30101 337 MKAGSPK|SL 0.122 . Chro.30101 341 SPKSLNK|IY 0.071 . Chro.30101 356 HNDTWIK|GG 0.061 . Chro.30101 377 NAIDYNK|LE 0.053 . Chro.30101 390 SNNLINK|NQ 0.080 . Chro.30101 404 SIQEILK|TK 0.062 . Chro.30101 406 QEILKTK|ES 0.067 . Chro.30101 413 ESSPISK|LR 0.061 . Chro.30101 415 SPISKLR|KK 0.111 . Chro.30101 416 PISKLRK|KT 0.099 . Chro.30101 417 ISKLRKK|TN 0.103 . ____________________________^_________________

  • Fasta :-

    >Chro.30101 ATGGATTTAAAATTGGAATTCCTCAATAAAACTGAAAATAGAACAACAGGATGCAGTGCA CAATGCATATTTGGCAAAATAATTCTGTTAATAGCGTCAATAATATTATTATTAGGGCTT TTGGTTTGGATATTCCAGGAGAAGCTTCTGTTCTTTCCAAATATTAATGGGAAAAGAGAC TTAGCATCAAACTTCCCAGGATACAGACATCCAAATGAGAATAAAATGAATTCAGAAGAT GTAGTTTTAACTACGGATGATAATGTTAAATTATATTGCTGGTTTATAATACATAAGAAG TTTGACAGATATTCTCATGAACAATCAAGTGCGATGCATATTAGTTCTAATCTATCAGAA CCTCATCATTTGGAACAAGTTAAAAAAGATAGTCCAAGGAAAAAGATTTTAGATAAAATA AGAAAGGCTCCAAAATATATGAAATTCCATTTCCCTGAATTTTCAGATAGATATGAACAA CAGGAAAAAGCTCCAACAATTGTCTTTTTTCATGGTAATGCTGGCAATATTGGGCACAGA CTACCTAGGTTCTTGGAGTTTTATAATTTGATTGGTGTTAATATATTTGCAGTTTCTTAT AGAGGATATGGGGACAGTGAGGGGACCCCTTCTGAAGAAGGTTTCTATTTGGATGCTAAA GCTTCACTTGAGTACGTCCTTTCTAGGACTGATGTGGTGGACAAGAATATGATCTTTTTA TATGGACATTCCATTGGCGGCGCTGTTGCCATTGATCTCGCTTCTAAGTATGATGTTACT GGCGTTATTCTAGAAAATACCTTCACTAACATTAAATCAGTTGCTTTCAGAGTTTATCCA ATATTTAAATATTTTGGATTTTTCTTCAAATTCATACAAAGACTTAAATTTGATTCAGTA TCTAAAATCTCACGTGTTAAATCTCCTATCTTATTTGTAGTTGGGAATGAGGATGAAATA ATACCTCCCACACATTCTGTTGAATTATATATGAAGGCGGGATCGCCAAAATCTTTAAAC AAAATTTATCTAGTATCAGGTGGCTCACACAATGACACATGGATTAAAGGCGGAATGGAA TTTTATTTAATGCTGCTACAATTTATATATAATGCCATTGATTATAACAAACTTGAATTA GAAGTATCTTCAAACAATTTGATAAACAAAAATCAAGAAGAGACTTTATTTTCAATACAG GAAATTTTAAAAACTAAGGAAAGTTCTCCTATAAGTAAGCTAAGAAAAAAAACAAATTAA
  • Download Fasta

  • Fasta :-

    MDLKLEFLNKTENRTTGCSAQCIFGKIILLIASIILLLGLLVWIFQEKLLFFPNINGKRD LASNFPGYRHPNENKMNSEDVVLTTDDNVKLYCWFIIHKKFDRYSHEQSSAMHISSNLSE PHHLEQVKKDSPRKKILDKIRKAPKYMKFHFPEFSDRYEQQEKAPTIVFFHGNAGNIGHR LPRFLEFYNLIGVNIFAVSYRGYGDSEGTPSEEGFYLDAKASLEYVLSRTDVVDKNMIFL YGHSIGGAVAIDLASKYDVTGVILENTFTNIKSVAFRVYPIFKYFGFFFKFIQRLKFDSV SKISRVKSPILFVVGNEDEIIPPTHSVELYMKAGSPKSLNKIYLVSGGSHNDTWIKGGME FYLMLLQFIYNAIDYNKLELEVSSNNLINKNQEETLFSIQEILKTKESSPISKLRKKTN

    No Results
IDSitePositionGscoreIscore
Chro.30101T4180.5070.029
IDSitePositionGscoreIscore
Chro.30101T4180.5070.029
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.30101308 SSRVKSPILF0.994unspChro.30101308 SSRVKSPILF0.994unspChro.30101308 SSRVKSPILF0.994unspChro.30101105 SFDRYSHEQS0.996unspChro.30101209 TDSEGTPSEE0.993unsp

Chro.30101      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India