Chro.30106 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008234      

  • Computed_GO_Functions:  cysteine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.30106OTHER0.9982850.0003250.001391
No Results

  • Fasta :-

    >Chro.30106 MCGDYQDYLRLRKWVKRVSTPLLLNDAIVIPMHCNQTSHWWLIVICHPHKIFNLMNSSSP RNNSTTKIENSNRGWIICMDSLGGKNISQNEKKKAIINILKFLDIERQNNDSYFNLLEAG NIPTMVYDSVNTKAHNTNTSVTHDKLSETFRSLSNWEIIYNPRSLPFQENNFDCGIYIIE YAHLLFHYGTTIFNSMINTSSSSDVSHTTHLDQNKFSRNWFQNRRIVYTKVLEFMSNNES WNEDNFLRNKLVEIFDDSIEASNHNEKPSQENISSLQARRRFVMSSLNKSYFNK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/376 Sequence name : 376 Sequence length : 294 VALUES OF COMPUTED PARAMETERS Coef20 : 4.154 CoefTot : -0.250 ChDiff : 3 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.941 1.182 -0.007 0.544 MesoH : -0.678 -0.096 -0.500 0.121 MuHd_075 : 27.453 11.665 4.643 6.048 MuHd_095 : 15.585 10.145 4.486 5.200 MuHd_100 : 22.594 15.138 5.523 6.814 MuHd_105 : 35.412 22.470 9.811 8.510 Hmax_075 : -2.683 3.733 -2.952 1.645 Hmax_095 : -7.500 3.900 -2.767 2.790 Hmax_100 : -7.500 5.800 -2.791 2.790 Hmax_105 : -2.900 5.300 -0.235 2.809 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5299 0.4701 DFMC : 0.7795 0.2205
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 294 Chro.30106 MCGDYQDYLRLRKWVKRVSTPLLLNDAIVIPMHCNQTSHWWLIVICHPHKIFNLMNSSSPRNNSTTKIENSNRGWIICMD 80 SLGGKNISQNEKKKAIINILKFLDIERQNNDSYFNLLEAGNIPTMVYDSVNTKAHNTNTSVTHDKLSETFRSLSNWEIIY 160 NPRSLPFQENNFDCGIYIIEYAHLLFHYGTTIFNSMINTSSSSDVSHTTHLDQNKFSRNWFQNRRIVYTKVLEFMSNNES 240 WNEDNFLRNKLVEIFDDSIEASNHNEKPSQENISSLQARRRFVMSSLNKSYFNK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ...................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30106 10 DYQDYLR|LR 0.068 . Chro.30106 12 QDYLRLR|KW 0.086 . Chro.30106 13 DYLRLRK|WV 0.173 . Chro.30106 16 RLRKWVK|RV 0.083 . Chro.30106 17 LRKWVKR|VS 0.245 . Chro.30106 50 VICHPHK|IF 0.060 . Chro.30106 61 MNSSSPR|NN 0.132 . Chro.30106 67 RNNSTTK|IE 0.069 . Chro.30106 73 KIENSNR|GW 0.114 . Chro.30106 85 MDSLGGK|NI 0.088 . Chro.30106 92 NISQNEK|KK 0.062 . Chro.30106 93 ISQNEKK|KA 0.131 . Chro.30106 94 SQNEKKK|AI 0.180 . Chro.30106 101 AIINILK|FL 0.070 . Chro.30106 107 KFLDIER|QN 0.080 . Chro.30106 133 YDSVNTK|AH 0.069 . Chro.30106 145 TSVTHDK|LS 0.076 . Chro.30106 151 KLSETFR|SL 0.253 . Chro.30106 163 EIIYNPR|SL 0.134 . Chro.30106 215 THLDQNK|FS 0.067 . Chro.30106 218 DQNKFSR|NW 0.138 . Chro.30106 224 RNWFQNR|RI 0.082 . Chro.30106 225 NWFQNRR|IV 0.175 . Chro.30106 230 RRIVYTK|VL 0.071 . Chro.30106 248 NEDNFLR|NK 0.075 . Chro.30106 250 DNFLRNK|LV 0.071 . Chro.30106 267 ASNHNEK|PS 0.069 . Chro.30106 279 ISSLQAR|RR 0.100 . Chro.30106 280 SSLQARR|RF 0.087 . Chro.30106 281 SLQARRR|FV 0.356 . Chro.30106 289 VMSSLNK|SY 0.086 . Chro.30106 294 NKSYFNK|-- 0.083 . ____________________________^_________________

  • Fasta :-

    >Chro.30106 ATGTGTGGAGACTATCAAGATTATTTAAGGCTAAGAAAATGGGTTAAGAGGGTTTCTACT CCATTATTGCTAAATGATGCAATTGTAATTCCAATGCATTGTAACCAAACTAGCCATTGG TGGTTAATTGTTATTTGCCATCCTCATAAAATCTTTAATTTGATGAATTCCTCTAGTCCA AGAAATAACTCAACTACAAAAATTGAGAACTCGAATAGAGGTTGGATTATATGTATGGAT TCTCTAGGAGGAAAGAATATTAGTCAGAATGAAAAGAAAAAAGCTATAATAAATATTTTG AAGTTTTTAGATATAGAAAGACAAAATAATGATAGCTATTTTAATCTTCTAGAGGCTGGA AACATACCTACAATGGTTTATGATTCTGTAAATACTAAAGCTCATAATACTAACACTTCA GTTACTCATGATAAATTATCTGAGACTTTTAGATCCTTGAGTAACTGGGAGATTATATAT AATCCAAGGAGCCTTCCTTTTCAGGAAAATAACTTTGACTGCGGAATATATATCATTGAA TATGCTCACTTGCTTTTCCACTATGGAACCACTATTTTTAACTCTATGATTAATACTAGT TCAAGCTCTGATGTTTCGCACACAACTCATTTGGATCAAAACAAATTCTCCAGAAACTGG TTTCAAAATAGAAGAATTGTTTACACCAAGGTTTTGGAATTCATGAGTAATAATGAGAGT TGGAATGAGGACAATTTTCTAAGAAATAAGTTAGTGGAGATCTTTGATGACAGTATCGAA GCTTCAAATCATAATGAAAAACCTTCTCAAGAGAATATTTCATCATTACAAGCCAGAAGA AGATTTGTAATGTCATCCTTAAACAAAAGCTATTTCAATAAGTAG
  • Download Fasta

  • Fasta :-

    MCGDYQDYLRLRKWVKRVSTPLLLNDAIVIPMHCNQTSHWWLIVICHPHKIFNLMNSSSP RNNSTTKIENSNRGWIICMDSLGGKNISQNEKKKAIINILKFLDIERQNNDSYFNLLEAG NIPTMVYDSVNTKAHNTNTSVTHDKLSETFRSLSNWEIIYNPRSLPFQENNFDCGIYIIE YAHLLFHYGTTIFNSMINTSSSSDVSHTTHLDQNKFSRNWFQNRRIVYTKVLEFMSNNES WNEDNFLRNKLVEIFDDSIEASNHNEKPSQENISSLQARRRFVMSSLNKSYFNK

    No Results
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Chro.30106      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India