Chro.30255 | proteasome subunit alpha type 6 (20S proteasome alpha subunit A) (20S proteasome subunit alpha-1) (Proteasome iota subunit)

_IDPredictionOTHERSPmTPCS_Position
Chro.30255OTHER0.9292920.0598480.010860
No Results

  • Fasta :-

    >Chro.30255 MRLLGASGMFISIDDEDGPSLYKIDPAGYFASYRACAVGTKEREGNNALEKIIKNEPLNS YEEVISASIDCLKTLLGVDFKAEDIEVGVVTKDMPEFRLLSVEEIDNYLTSIAERD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/362 Sequence name : 362 Sequence length : 116 VALUES OF COMPUTED PARAMETERS Coef20 : 3.393 CoefTot : 0.244 ChDiff : -11 ZoneTo : 13 KR : 1 DE : 0 CleavSite : 12 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.194 1.312 -0.001 0.422 MesoH : -1.505 -0.001 -0.560 0.102 MuHd_075 : 19.164 9.216 4.761 4.443 MuHd_095 : 12.669 3.913 3.116 2.021 MuHd_100 : 12.125 6.700 3.305 2.969 MuHd_105 : 9.116 9.903 2.604 3.487 Hmax_075 : 4.900 9.700 0.370 4.300 Hmax_095 : 6.213 7.000 0.115 3.480 Hmax_100 : 4.800 10.200 0.382 4.200 Hmax_105 : 3.033 10.033 -0.156 3.780 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9909 0.0091 DFMC : 0.9889 0.0111
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 116 Chro.30255 MRLLGASGMFISIDDEDGPSLYKIDPAGYFASYRACAVGTKEREGNNALEKIIKNEPLNSYEEVISASIDCLKTLLGVDF 80 KAEDIEVGVVTKDMPEFRLLSVEEIDNYLTSIAERD 160 ................................................................................ 80 .................................... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30255 2 -----MR|LL 0.134 . Chro.30255 23 DGPSLYK|ID 0.055 . Chro.30255 34 GYFASYR|AC 0.093 . Chro.30255 41 ACAVGTK|ER 0.059 . Chro.30255 43 AVGTKER|EG 0.085 . Chro.30255 51 GNNALEK|II 0.070 . Chro.30255 54 ALEKIIK|NE 0.053 . Chro.30255 73 ASIDCLK|TL 0.060 . Chro.30255 81 LLGVDFK|AE 0.067 . Chro.30255 92 EVGVVTK|DM 0.064 . Chro.30255 98 KDMPEFR|LL 0.119 . Chro.30255 115 LTSIAER|D- 0.128 . ____________________________^_________________

  • Fasta :-

    >Chro.30255 ATGAGACTTTTGGGTGCTTCTGGGATGTTTATATCAATAGATGATGAAGATGGGCCTTCA TTATACAAGATTGACCCAGCTGGGTACTTTGCCTCCTACAGAGCATGCGCTGTTGGTACA AAAGAGAGAGAGGGGAATAATGCACTCGAGAAGATTATCAAGAACGAGCCTCTAAACAGC TACGAAGAAGTTATTTCTGCAAGTATTGACTGTCTGAAAACCCTACTTGGAGTAGATTTC AAAGCTGAAGACATAGAGGTTGGTGTTGTTACAAAAGATATGCCCGAATTTAGACTATTA AGCGTTGAAGAAATTGATAATTACCTAACTAGTATCGCTGAAAGGGATTAG
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  • Fasta :-

    MRLLGASGMFISIDDEDGPSLYKIDPAGYFASYRACAVGTKEREGNNALEKIIKNEPLNS YEEVISASIDCLKTLLGVDFKAEDIEVGVVTKDMPEFRLLSVEEIDNYLTSIAERD

    No Results
No Results
No Results
IDSitePeptideScoreMethod
Chro.30255101 SFRLLSVEEI0.997unsp

Chro.30255      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India