Chro.30260 | proteasome subunit alpha type 3

_IDPredictionOTHERSPmTPCS_Position
Chro.30260OTHER0.9998930.0000980.000008
No Results

  • Fasta :-

    >Chro.30260 MTSVGSGYDSSVSTFSPDGRVFQVEYANKAVDNSGTTIAMIYNSGIVFAVDKYVASKMMV AGTNRRVFAIDNQIGCCVAGFVTDSNKIISIARSESLNYQKIYGNSIPIRVLAERIAMYM HNFTLYGSVRPFGCSILLGGLDQDRGVELYCIHPSGSCYKYCAMAVGKGRQFARTDLEKL IEKNLSEEDALYEAARVIIQSREEGASKNLELEMAFIGPGSDFQFSIIPEKQINLLNERV EKYIDDLASAE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/408 Sequence name : 408 Sequence length : 251 VALUES OF COMPUTED PARAMETERS Coef20 : 3.707 CoefTot : -0.433 ChDiff : -5 ZoneTo : 8 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.465 1.400 0.190 0.556 MesoH : -0.438 0.459 -0.256 0.212 MuHd_075 : 21.947 6.208 4.180 1.764 MuHd_095 : 12.438 15.736 3.824 4.478 MuHd_100 : 7.640 13.916 2.164 4.262 MuHd_105 : 4.555 9.037 0.791 3.382 Hmax_075 : 12.250 2.333 0.469 2.228 Hmax_095 : 13.200 10.600 1.660 4.600 Hmax_100 : 13.200 10.600 1.660 4.600 Hmax_105 : 6.767 3.000 0.127 2.730 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9413 0.0587 DFMC : 0.9171 0.0829
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 251 Chro.30260 MTSVGSGYDSSVSTFSPDGRVFQVEYANKAVDNSGTTIAMIYNSGIVFAVDKYVASKMMVAGTNRRVFAIDNQIGCCVAG 80 FVTDSNKIISIARSESLNYQKIYGNSIPIRVLAERIAMYMHNFTLYGSVRPFGCSILLGGLDQDRGVELYCIHPSGSCYK 160 YCAMAVGKGRQFARTDLEKLIEKNLSEEDALYEAARVIIQSREEGASKNLELEMAFIGPGSDFQFSIIPEKQINLLNERV 240 EKYIDDLASAE 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30260 20 TFSPDGR|VF 0.093 . Chro.30260 29 QVEYANK|AV 0.091 . Chro.30260 52 IVFAVDK|YV 0.081 . Chro.30260 57 DKYVASK|MM 0.065 . Chro.30260 65 MVAGTNR|RV 0.133 . Chro.30260 66 VAGTNRR|VF 0.089 . Chro.30260 87 FVTDSNK|II 0.069 . Chro.30260 93 KIISIAR|SE 0.106 . Chro.30260 101 ESLNYQK|IY 0.068 . Chro.30260 110 GNSIPIR|VL 0.122 . Chro.30260 115 IRVLAER|IA 0.102 . Chro.30260 130 TLYGSVR|PF 0.115 . Chro.30260 145 GGLDQDR|GV 0.109 . Chro.30260 160 PSGSCYK|YC 0.073 . Chro.30260 168 CAMAVGK|GR 0.068 . Chro.30260 170 MAVGKGR|QF 0.085 . Chro.30260 174 KGRQFAR|TD 0.104 . Chro.30260 179 ARTDLEK|LI 0.075 . Chro.30260 183 LEKLIEK|NL 0.060 . Chro.30260 196 ALYEAAR|VI 0.116 . Chro.30260 202 RVIIQSR|EE 0.100 . Chro.30260 208 REEGASK|NL 0.063 . Chro.30260 231 FSIIPEK|QI 0.062 . Chro.30260 239 INLLNER|VE 0.062 . Chro.30260 242 LNERVEK|YI 0.189 . ____________________________^_________________

  • Fasta :-

    >Chro.30260 ATGACTAGTGTAGGATCTGGATATGACTCATCAGTTTCTACCTTCTCTCCTGATGGCCGT GTCTTCCAAGTCGAATATGCAAACAAAGCTGTTGACAATAGTGGAACAACTATTGCAATG ATTTACAACTCTGGTATTGTTTTTGCTGTAGACAAATATGTTGCTAGCAAAATGATGGTA GCAGGTACTAACAGAAGAGTTTTTGCGATAGATAATCAGATTGGTTGTTGTGTTGCGGGA TTTGTTACGGATTCGAACAAGATCATTTCAATAGCACGTTCAGAGTCGTTAAACTATCAA AAAATCTATGGGAATTCTATACCAATACGCGTGTTAGCAGAGAGAATTGCAATGTATATG CATAACTTTACTCTTTATGGTTCTGTTCGACCGTTCGGTTGTTCAATACTTCTGGGGGGA CTTGATCAGGATAGAGGTGTTGAGCTCTATTGTATTCATCCATCCGGCTCATGCTATAAA TACTGCGCAATGGCAGTTGGTAAAGGTAGACAGTTTGCAAGAACTGACCTAGAAAAGCTA ATAGAGAAAAATTTATCCGAGGAAGACGCGTTATACGAGGCTGCAAGAGTGATAATACAA TCTAGAGAGGAAGGAGCATCAAAAAACCTTGAACTGGAAATGGCCTTTATTGGCCCTGGA TCAGATTTCCAATTTTCTATAATTCCTGAAAAACAAATAAATTTGCTCAACGAGCGTGTC GAGAAATACATAGATGACCTTGCAAGCGCCGAGTAG
  • Download Fasta

  • Fasta :-

    MTSVGSGYDSSVSTFSPDGRVFQVEYANKAVDNSGTTIAMIYNSGIVFAVDKYVASKMMV AGTNRRVFAIDNQIGCCVAGFVTDSNKIISIARSESLNYQKIYGNSIPIRVLAERIAMYM HNFTLYGSVRPFGCSILLGGLDQDRGVELYCIHPSGSCYKYCAMAVGKGRQFARTDLEKL IEKNLSEEDALYEAARVIIQSREEGASKNLELEMAFIGPGSDFQFSIIPEKQINLLNERV EKYIDDLASAE

  • title: active site
  • coordinates: G35,D51,Y53,R66,K168
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
Chro.30260T20.6680.170Chro.30260S30.5500.073Chro.30260S60.5120.020
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
Chro.30260T20.6680.170Chro.30260S30.5500.073Chro.30260S60.5120.020
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.30260201 SVIIQSREEG0.99unspChro.30260201 SVIIQSREEG0.99unspChro.30260201 SVIIQSREEG0.99unspChro.302606 STSVGSGYDS0.996unspChro.30260186 SEKNLSEEDA0.998unsp

Chro.30260      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India