Chro.30278 | nuclear DNA-binding protein G2p -related

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_IDPredictionOTHERSPmTPCS_Position
Chro.30278OTHER0.9999700.0000260.000004
No Results

  • Fasta :-

    >Chro.30278 MSKQEGLENVDDFCISESISNSEVVTKYYTAAEIVNSTLQYVITLCLDGADISEICRKSD SMIEEKSSSVYNKKEGGRKLDKGIAFPTCISVNEICGNFSPLPAESLKLKNGDLIKIDLG AHIDGFISICSHSIVIGAERISGKQADVLKAANTAMEVAIRTVKPGNTNTYVTSILNKTV KEFNCNMVQGVLSHQLKRHVIDGNRVIISKETLDEKVDEFTFEENEVYGLDILVSSGEGV TRESDYRSTVFKRAIETNYNLKSPIPRQFLSEVNKRFPTLPFSLNMISDEKVARLGVSEC IRHNLLYSYPVITERQGEYVASFKCTLLLLPNGSKRISGLQFTQENICDSEFKVTDEEIN SILSTPLSVKKKKKNKPIVSS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/71 Sequence name : 71 Sequence length : 381 VALUES OF COMPUTED PARAMETERS Coef20 : 3.400 CoefTot : -0.156 ChDiff : -3 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.824 1.265 0.095 0.525 MesoH : -0.584 0.450 -0.315 0.242 MuHd_075 : 24.565 15.723 8.111 4.630 MuHd_095 : 19.410 13.388 7.106 2.794 MuHd_100 : 13.469 10.627 4.965 1.893 MuHd_105 : 13.177 9.986 3.907 1.911 Hmax_075 : 4.550 10.733 1.577 3.698 Hmax_095 : -2.187 6.800 -0.995 1.566 Hmax_100 : -4.500 5.500 -1.701 1.930 Hmax_105 : -4.900 6.883 -1.701 1.930 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9488 0.0512 DFMC : 0.9489 0.0511
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 381 Chro.30278 MSKQEGLENVDDFCISESISNSEVVTKYYTAAEIVNSTLQYVITLCLDGADISEICRKSDSMIEEKSSSVYNKKEGGRKL 80 DKGIAFPTCISVNEICGNFSPLPAESLKLKNGDLIKIDLGAHIDGFISICSHSIVIGAERISGKQADVLKAANTAMEVAI 160 RTVKPGNTNTYVTSILNKTVKEFNCNMVQGVLSHQLKRHVIDGNRVIISKETLDEKVDEFTFEENEVYGLDILVSSGEGV 240 TRESDYRSTVFKRAIETNYNLKSPIPRQFLSEVNKRFPTLPFSLNMISDEKVARLGVSECIRHNLLYSYPVITERQGEYV 320 ASFKCTLLLLPNGSKRISGLQFTQENICDSEFKVTDEEINSILSTPLSVKKKKKNKPIVSS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30278 3 ----MSK|QE 0.063 . Chro.30278 27 NSEVVTK|YY 0.085 . Chro.30278 57 DISEICR|KS 0.089 . Chro.30278 58 ISEICRK|SD 0.160 . Chro.30278 66 DSMIEEK|SS 0.083 . Chro.30278 73 SSSVYNK|KE 0.084 . Chro.30278 74 SSVYNKK|EG 0.126 . Chro.30278 78 NKKEGGR|KL 0.112 . Chro.30278 79 KKEGGRK|LD 0.068 . Chro.30278 82 GGRKLDK|GI 0.065 . Chro.30278 108 LPAESLK|LK 0.064 . Chro.30278 110 AESLKLK|NG 0.067 . Chro.30278 116 KNGDLIK|ID 0.058 . Chro.30278 140 IVIGAER|IS 0.101 . Chro.30278 144 AERISGK|QA 0.079 . Chro.30278 150 KQADVLK|AA 0.081 . Chro.30278 161 AMEVAIR|TV 0.121 . Chro.30278 164 VAIRTVK|PG 0.094 . Chro.30278 178 VTSILNK|TV 0.077 . Chro.30278 181 ILNKTVK|EF 0.072 . Chro.30278 197 VLSHQLK|RH 0.063 . Chro.30278 198 LSHQLKR|HV 0.480 . Chro.30278 205 HVIDGNR|VI 0.077 . Chro.30278 210 NRVIISK|ET 0.066 . Chro.30278 216 KETLDEK|VD 0.054 . Chro.30278 242 SGEGVTR|ES 0.082 . Chro.30278 247 TRESDYR|ST 0.145 . Chro.30278 252 YRSTVFK|RA 0.086 . Chro.30278 253 RSTVFKR|AI 0.351 . Chro.30278 262 ETNYNLK|SP 0.072 . Chro.30278 267 LKSPIPR|QF 0.106 . Chro.30278 275 FLSEVNK|RF 0.066 . Chro.30278 276 LSEVNKR|FP 0.138 . Chro.30278 291 NMISDEK|VA 0.058 . Chro.30278 294 SDEKVAR|LG 0.078 . Chro.30278 302 GVSECIR|HN 0.073 . Chro.30278 315 YPVITER|QG 0.084 . Chro.30278 324 EYVASFK|CT 0.059 . Chro.30278 335 LLPNGSK|RI 0.065 . Chro.30278 336 LPNGSKR|IS 0.375 . Chro.30278 353 ICDSEFK|VT 0.072 . Chro.30278 370 STPLSVK|KK 0.057 . Chro.30278 371 TPLSVKK|KK 0.089 . Chro.30278 372 PLSVKKK|KK 0.140 . Chro.30278 373 LSVKKKK|KN 0.141 . Chro.30278 374 SVKKKKK|NK 0.118 . Chro.30278 376 KKKKKNK|PI 0.077 . ____________________________^_________________

  • Fasta :-

    >Chro.30278 ATGTCAAAACAAGAAGGGCTTGAGAACGTAGACGACTTTTGCATTTCTGAGTCGATATCC AACTCAGAGGTTGTTACTAAATACTACACAGCAGCAGAGATAGTAAATTCAACGCTTCAG TATGTAATAACATTATGTTTGGATGGCGCAGATATCTCAGAAATATGCAGGAAAAGCGAC TCTATGATCGAGGAGAAGTCAAGTTCAGTTTATAACAAAAAAGAAGGTGGCAGGAAATTG GATAAGGGTATTGCATTTCCTACGTGCATTTCTGTAAATGAAATTTGTGGCAATTTTTCC CCTTTGCCTGCAGAAAGCTTAAAGTTGAAGAATGGTGACTTAATTAAGATTGACCTCGGC GCTCATATAGATGGATTTATTAGTATTTGCTCGCATTCCATTGTTATTGGAGCTGAACGT ATTTCAGGAAAACAAGCAGATGTTTTAAAGGCAGCAAATACTGCGATGGAAGTGGCTATT CGAACTGTAAAACCTGGAAACACTAACACATATGTAACATCTATACTTAACAAGACTGTT AAGGAATTTAACTGCAATATGGTTCAGGGAGTTTTGTCACATCAGCTAAAAAGACATGTT ATTGATGGAAATCGTGTAATCATTTCAAAAGAAACACTAGATGAAAAAGTAGATGAATTC ACGTTCGAGGAAAATGAAGTTTATGGATTGGATATTTTAGTAAGCAGTGGAGAGGGTGTT ACCAGGGAGTCTGATTACAGAAGCACAGTTTTTAAACGCGCTATTGAAACGAACTATAAC TTGAAAAGCCCGATTCCAAGGCAATTTCTAAGTGAAGTTAACAAAAGATTCCCTACATTA CCGTTTTCGTTAAATATGATATCAGATGAAAAGGTTGCAAGATTGGGAGTTTCTGAATGC ATTAGACATAACCTTTTGTATTCATACCCTGTAATAACAGAGAGACAAGGTGAGTACGTT GCGAGCTTTAAATGTACACTTCTACTGCTTCCAAATGGTTCAAAACGCATTTCCGGCTTA CAATTCACACAGGAAAATATTTGTGACTCGGAATTCAAGGTAACGGATGAAGAAATTAAT TCAATTCTTTCAACTCCACTCTCAGTGAAGAAGAAGAAGAAAAACAAACCTATAGTTAGT TCTTAG
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  • Fasta :-

    MSKQEGLENVDDFCISESISNSEVVTKYYTAAEIVNSTLQYVITLCLDGADISEICRKSD SMIEEKSSSVYNKKEGGRKLDKGIAFPTCISVNEICGNFSPLPAESLKLKNGDLIKIDLG AHIDGFISICSHSIVIGAERISGKQADVLKAANTAMEVAIRTVKPGNTNTYVTSILNKTV KEFNCNMVQGVLSHQLKRHVIDGNRVIISKETLDEKVDEFTFEENEVYGLDILVSSGEGV TRESDYRSTVFKRAIETNYNLKSPIPRQFLSEVNKRFPTLPFSLNMISDEKVARLGVSEC IRHNLLYSYPVITERQGEYVASFKCTLLLLPNGSKRISGLQFTQENICDSEFKVTDEEIN SILSTPLSVKKKKKNKPIVSS

  • title: active site
  • coordinates: N98,D118,I129,E238,Y307,K324
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.30278244 SVTRESDYRS0.996unspChro.30278244 SVTRESDYRS0.996unspChro.30278244 SVTRESDYRS0.996unspChro.3027861 SRKSDSMIEE0.994unspChro.30278142 SAERISGKQA0.997unsp

Chro.30278      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India