Chro.30293 | proteasome component precursor

UniProt_ID:

Computed_GO_Component_IDs: GO:0005839
Computed_GO_Components: proteasome core complex
Computed_GO_Function_IDs: GO:0004298
Computed_GO_Functions: threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	Chro.30293	OTHER	0.999093	0.000403	0.000503

No Results

Fasta :-
>Chro.30293 MNAYLNAYFSEKSTNGFLFENNIATAPCLSGSTEPKTVKTGTTIVGVACNDCVVLGADTR ATNGPIVADKDCEKIHRLSDNIFAAGAGTAADLDHVTSLIEGNLELQKLQMNRKPRVAHA VSMLSDHLYKYQGYVGAHLIVAGSDSTGNFVFQVSANGCIMQLPFTSMGSGSLCARSILE ARYRDGLTESECVELVSDAIRAGIYNDLYSGSNVNILIIKNNYVKHFRHFDTKASERIYR QPKPISFPVGTTPIIAEKTEDLSSFVVEVSEVQIDENMD
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/902 Sequence name : 902 Sequence length : 279 VALUES OF COMPUTED PARAMETERS Coef20 : 3.682 CoefTot : -0.066 ChDiff : -8 ZoneTo : 10 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.500 1.418 0.273 0.493 MesoH : -0.130 0.372 -0.228 0.224 MuHd_075 : 23.944 13.864 7.707 4.203 MuHd_095 : 16.117 7.759 2.979 2.174 MuHd_100 : 11.895 4.587 3.334 1.006 MuHd_105 : 15.990 6.915 5.237 2.293 Hmax_075 : 12.133 8.867 1.266 4.460 Hmax_095 : 4.987 4.287 -1.512 2.800 Hmax_100 : 6.700 5.200 -0.606 2.570 Hmax_105 : 10.850 4.800 0.747 3.030 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9372 0.0628 DFMC : 0.8953 0.1047

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 279 Chro.30293 MNAYLNAYFSEKSTNGFLFENNIATAPCLSGSTEPKTVKTGTTIVGVACNDCVVLGADTRATNGPIVADKDCEKIHRLSD 80 NIFAAGAGTAADLDHVTSLIEGNLELQKLQMNRKPRVAHAVSMLSDHLYKYQGYVGAHLIVAGSDSTGNFVFQVSANGCI 160 MQLPFTSMGSGSLCARSILEARYRDGLTESECVELVSDAIRAGIYNDLYSGSNVNILIIKNNYVKHFRHFDTKASERIYR 240 QPKPISFPVGTTPIIAEKTEDLSSFVVEVSEVQIDENMD 320 ................................................................................ 80 ...................................P............................................ 160 ................................................................................ 240 ....................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ Chro.30293 12 NAYFSEK|ST 0.089 . Chro.30293 36 SGSTEPK|TV 0.112 . Chro.30293 39 TEPKTVK|TG 0.063 . Chro.30293 60 VLGADTR|AT 0.080 . Chro.30293 70 GPIVADK|DC 0.097 . Chro.30293 74 ADKDCEK|IH 0.057 . Chro.30293 77 DCEKIHR|LS 0.086 . Chro.30293 108 GNLELQK|LQ 0.054 . Chro.30293 113 QKLQMNR|KP 0.077 . Chro.30293 114 KLQMNRK|PR 0.077 . Chro.30293 116 QMNRKPR|VA 0.525 *ProP* Chro.30293 130 LSDHLYK|YQ 0.087 . Chro.30293 176 SGSLCAR|SI 0.161 . Chro.30293 182 RSILEAR|YR 0.103 . Chro.30293 184 ILEARYR|DG 0.093 . Chro.30293 201 LVSDAIR|AG 0.086 . Chro.30293 220 VNILIIK|NN 0.059 . Chro.30293 225 IKNNYVK|HF 0.065 . Chro.30293 228 NYVKHFR|HF 0.106 . Chro.30293 233 FRHFDTK|AS 0.088 . Chro.30293 237 DTKASER|IY 0.086 . Chro.30293 240 ASERIYR|QP 0.223 . Chro.30293 243 RIYRQPK|PI 0.169 . Chro.30293 258 TPIIAEK|TE 0.059 . ____________________________^_________________

Fasta :-
>Chro.30293 ATGAATGCCTACTTAAATGCTTATTTTTCTGAAAAATCAACAAATGGGTTCTTATTCGAA AATAATATTGCAACTGCTCCCTGCCTATCTGGCTCAACTGAACCTAAAACAGTTAAAACT GGTACTACGATTGTAGGAGTTGCTTGCAACGATTGTGTTGTTCTTGGTGCAGATACTAGA GCAACGAATGGTCCTATTGTTGCAGATAAAGATTGTGAAAAGATACACCGGCTTTCAGAT AACATTTTTGCTGCTGGGGCAGGAACTGCTGCTGACCTTGATCATGTAACTTCTCTTATT GAGGGAAATTTGGAATTGCAGAAACTTCAAATGAATCGAAAACCCAGAGTAGCGCATGCG GTTTCTATGCTTAGCGACCACTTATATAAATACCAAGGCTATGTTGGTGCCCATTTAATA GTTGCAGGCTCCGATTCTACAGGAAATTTTGTATTCCAAGTTTCAGCAAATGGTTGCATC ATGCAGCTACCATTTACATCTATGGGGAGTGGTTCTCTATGCGCAAGGTCGATATTAGAA GCAAGGTATAGGGATGGTCTAACGGAGAGTGAATGTGTAGAATTAGTTTCAGATGCGATT AGGGCAGGGATTTATAATGATCTCTATAGTGGAAGTAACGTAAATATTCTTATTATCAAA AACAATTATGTTAAACATTTTAGACATTTTGATACTAAGGCCAGCGAAAGAATCTACCGA CAGCCAAAGCCCATTTCATTTCCCGTTGGTACAACTCCAATTATTGCAGAAAAGACGGAA GATTTGAGTTCATTTGTTGTAGAGGTATCTGAAGTACAAATTGATGAAAATATGGATTAA
Download Fasta

Fasta :-

MNAYLNAYFSEKSTNGFLFENNIATAPCLSGSTEPKTVKTGTTIVGVACNDCVVLGADTR ATNGPIVADKDCEKIHRLSDNIFAAGAGTAADLDHVTSLIEGNLELQKLQMNRKPRVAHA VSMLSDHLYKYQGYVGAHLIVAGSDSTGNFVFQVSANGCIMQLPFTSMGSGSLCARSILE ARYRDGLTESECVELVSDAIRAGIYNDLYSGSNVNILIIKNNYVKHFRHFDTKASERIYR QPKPISFPVGTTPIIAEKTEDLSSFVVEVSEVQIDENMD

Proteasome subunits

title: active site
coordinates: T42,D58,R60,K74,S170,D207,S210,G211

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	Chro.30293	T	259	0.516	0.077	Chro.30293	T	252	0.515	0.498	Chro.30293	T	33	0.502	0.038

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	Chro.30293	T	259	0.516	0.077	Chro.30293	T	252	0.515	0.498	Chro.30293	T	33	0.502	0.038

Chro.30293 | proteasome component precursor

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs: GO:0005839

Computed_GO_Components: proteasome core complex

Computed_GO_Function_IDs: GO:0004298

Computed_GO_Functions: threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Chro.30293

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India