Chro.30331 | hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
Chro.30331OTHER0.8033270.0334180.163255
No Results

  • Fasta :-

    >Chro.30331 MYRVTQMSIAHGICQFMKRSLGNLNIEKILNNFQDNESAKFSIHNMVNIGLIEFGIDPTS WIGPTTSSMIANKLINDNRSIISNIQIASITYAEGTIYRDQAVKHFSEVGSDSCTFVWLC MKLGTSKFNINSYKKTVISMSNVSQFICIMGGNNYLSGALLIVAFSNSFLYCLDPHIKVL PSFSDKNFIRDDFIQKVPTKIYWGELNPSLSMVYICRNLEDFDDLCSNLTRINSDLFEVI NNCDFEVKSINELDSGFLVV
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/588 Sequence name : 588 Sequence length : 260 VALUES OF COMPUTED PARAMETERS Coef20 : 4.390 CoefTot : -0.708 ChDiff : -4 ZoneTo : 26 KR : 3 DE : 0 CleavSite : 29 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.576 1.647 0.283 0.603 MesoH : 0.277 0.607 -0.161 0.303 MuHd_075 : 23.778 12.261 4.569 5.229 MuHd_095 : 37.666 30.830 11.756 9.248 MuHd_100 : 34.601 29.622 10.702 8.497 MuHd_105 : 28.867 23.415 9.097 6.372 Hmax_075 : 15.900 12.833 2.179 4.560 Hmax_095 : 16.100 22.800 5.397 6.247 Hmax_100 : 18.300 19.500 4.307 6.180 Hmax_105 : 16.300 17.500 4.307 4.970 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1859 0.8141 DFMC : 0.3670 0.6330 This protein is probably imported in mitochondria. f(Ser) = 0.0769 f(Arg) = 0.0769 CMi = 0.43290 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 260 Chro.30331 MYRVTQMSIAHGICQFMKRSLGNLNIEKILNNFQDNESAKFSIHNMVNIGLIEFGIDPTSWIGPTTSSMIANKLINDNRS 80 IISNIQIASITYAEGTIYRDQAVKHFSEVGSDSCTFVWLCMKLGTSKFNINSYKKTVISMSNVSQFICIMGGNNYLSGAL 160 LIVAFSNSFLYCLDPHIKVLPSFSDKNFIRDDFIQKVPTKIYWGELNPSLSMVYICRNLEDFDDLCSNLTRINSDLFEVI 240 NNCDFEVKSINELDSGFLVV 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30331 3 ----MYR|VT 0.093 . Chro.30331 18 GICQFMK|RS 0.066 . Chro.30331 19 ICQFMKR|SL 0.365 . Chro.30331 28 GNLNIEK|IL 0.062 . Chro.30331 40 QDNESAK|FS 0.091 . Chro.30331 73 SSMIANK|LI 0.074 . Chro.30331 79 KLINDNR|SI 0.135 . Chro.30331 99 AEGTIYR|DQ 0.099 . Chro.30331 104 YRDQAVK|HF 0.076 . Chro.30331 122 FVWLCMK|LG 0.054 . Chro.30331 127 MKLGTSK|FN 0.062 . Chro.30331 134 FNINSYK|KT 0.070 . Chro.30331 135 NINSYKK|TV 0.109 . Chro.30331 178 CLDPHIK|VL 0.053 . Chro.30331 186 LPSFSDK|NF 0.070 . Chro.30331 190 SDKNFIR|DD 0.129 . Chro.30331 196 RDDFIQK|VP 0.058 . Chro.30331 200 IQKVPTK|IY 0.071 . Chro.30331 217 SMVYICR|NL 0.096 . Chro.30331 231 LCSNLTR|IN 0.120 . Chro.30331 248 NCDFEVK|SI 0.079 . ____________________________^_________________

  • Fasta :-

    >Chro.30331 ATGTATAGAGTGACCCAAATGTCGATAGCTCACGGTATATGCCAATTTATGAAGAGGTCT CTGGGCAATTTAAATATCGAAAAAATTTTGAATAACTTTCAAGATAATGAAAGTGCAAAA TTTTCAATTCATAATATGGTAAATATTGGTCTGATTGAATTTGGAATTGATCCTACATCT TGGATTGGACCAACAACATCATCAATGATCGCAAATAAGCTGATAAATGATAATAGAAGC ATTATATCTAATATTCAGATTGCGAGTATTACCTATGCAGAAGGCACTATTTATAGGGAT CAAGCGGTTAAACACTTTTCAGAAGTAGGTTCAGATAGCTGTACTTTTGTATGGCTTTGC ATGAAGTTGGGTACGTCCAAATTCAATATTAACTCATATAAGAAAACAGTAATTTCAATG AGTAATGTCTCACAGTTCATATGTATTATGGGAGGTAATAATTATTTGTCAGGAGCTTTA TTAATTGTTGCATTTAGCAATTCCTTTTTGTATTGCTTAGATCCGCATATTAAAGTACTT CCATCATTTTCCGATAAAAACTTTATTAGGGATGACTTTATTCAAAAAGTTCCGACAAAG ATTTATTGGGGGGAACTGAATCCATCCTTATCCATGGTTTATATTTGCCGAAACCTTGAG GATTTTGATGATTTGTGCAGCAATTTAACTAGAATTAATTCTGATTTATTTGAAGTCATA AATAATTGTGATTTTGAAGTAAAGAGTATAAATGAATTAGATTCTGGGTTTTTAGTTGTA TAA
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  • Fasta :-

    MYRVTQMSIAHGICQFMKRSLGNLNIEKILNNFQDNESAKFSIHNMVNIGLIEFGIDPTS WIGPTTSSMIANKLINDNRSIISNIQIASITYAEGTIYRDQAVKHFSEVGSDSCTFVWLC MKLGTSKFNINSYKKTVISMSNVSQFICIMGGNNYLSGALLIVAFSNSFLYCLDPHIKVL PSFSDKNFIRDDFIQKVPTKIYWGELNPSLSMVYICRNLEDFDDLCSNLTRINSDLFEVI NNCDFEVKSINELDSGFLVV

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Chro.30331      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India