Chro.30369 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008270      

  • Computed_GO_Functions:  zinc ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.30369OTHER0.9646900.0347970.000512
No Results

  • Fasta :-

    >Chro.30369 MIFLSLIGAFEPFISIDNLKFIVKNLQILTGKEIKFIKHAETNINLVMKGRCSVGNISGL KDYADLKEQSNPGNHHQISTNSMLEVLLKMKNKFITENSKNQMDSNFFLIGITSLDIFPT NNHEYVFGQSDPEKGIAIISAYRLYQNNKNLMNSRILKVIMHEYGHLMKLGHCKHVCLMS VICSISELDNRTLYCCENCLNQIREKSSTSESVKNLFEF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/925 Sequence name : 925 Sequence length : 219 VALUES OF COMPUTED PARAMETERS Coef20 : 4.006 CoefTot : 0.247 ChDiff : 3 ZoneTo : 10 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.100 1.594 0.154 0.662 MesoH : -0.870 0.227 -0.458 0.174 MuHd_075 : 10.231 3.774 2.179 0.651 MuHd_095 : 7.294 8.620 1.941 2.228 MuHd_100 : 13.215 13.362 4.057 3.668 MuHd_105 : 17.676 17.031 5.471 4.751 Hmax_075 : 16.567 13.300 2.392 5.220 Hmax_095 : 14.000 13.912 1.762 5.407 Hmax_100 : 15.300 17.700 2.689 6.600 Hmax_105 : 21.700 23.567 4.300 8.120 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9709 0.0291 DFMC : 0.9786 0.0214
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 219 Chro.30369 MIFLSLIGAFEPFISIDNLKFIVKNLQILTGKEIKFIKHAETNINLVMKGRCSVGNISGLKDYADLKEQSNPGNHHQIST 80 NSMLEVLLKMKNKFITENSKNQMDSNFFLIGITSLDIFPTNNHEYVFGQSDPEKGIAIISAYRLYQNNKNLMNSRILKVI 160 MHEYGHLMKLGHCKHVCLMSVICSISELDNRTLYCCENCLNQIREKSSTSESVKNLFEF 240 ................................................................................ 80 ................................................................................ 160 ........................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30369 20 ISIDNLK|FI 0.075 . Chro.30369 24 NLKFIVK|NL 0.059 . Chro.30369 32 LQILTGK|EI 0.066 . Chro.30369 35 LTGKEIK|FI 0.082 . Chro.30369 38 KEIKFIK|HA 0.089 . Chro.30369 49 NINLVMK|GR 0.078 . Chro.30369 51 NLVMKGR|CS 0.098 . Chro.30369 61 GNISGLK|DY 0.066 . Chro.30369 67 KDYADLK|EQ 0.062 . Chro.30369 89 MLEVLLK|MK 0.065 . Chro.30369 91 EVLLKMK|NK 0.062 . Chro.30369 93 LLKMKNK|FI 0.079 . Chro.30369 100 FITENSK|NQ 0.057 . Chro.30369 134 GQSDPEK|GI 0.078 . Chro.30369 143 AIISAYR|LY 0.068 . Chro.30369 149 RLYQNNK|NL 0.064 . Chro.30369 155 KNLMNSR|IL 0.092 . Chro.30369 158 MNSRILK|VI 0.202 . Chro.30369 169 EYGHLMK|LG 0.057 . Chro.30369 174 MKLGHCK|HV 0.076 . Chro.30369 191 ISELDNR|TL 0.088 . Chro.30369 204 NCLNQIR|EK 0.075 . Chro.30369 206 LNQIREK|SS 0.076 . Chro.30369 214 STSESVK|NL 0.073 . ____________________________^_________________

  • Fasta :-

    >Chro.30369 ATGATATTTTTGTCTCTAATTGGTGCATTTGAGCCCTTTATAAGCATAGATAACCTCAAA TTTATTGTGAAAAACCTTCAGATTTTAACAGGGAAAGAAATCAAGTTTATTAAGCATGCA GAAACTAATATAAATTTGGTTATGAAGGGAAGGTGTAGTGTTGGTAATATTTCTGGCCTT AAGGACTATGCAGATTTGAAGGAGCAATCAAATCCAGGAAACCATCATCAGATCTCTACA AATTCTATGCTGGAAGTATTGCTTAAGATGAAAAATAAATTTATCACAGAAAATTCAAAA AATCAGATGGATTCCAACTTTTTTTTAATTGGAATAACAAGCTTGGACATATTTCCAACA AATAATCATGAATATGTATTCGGTCAAAGCGACCCAGAAAAAGGAATTGCAATAATATCT GCATATAGGCTATATCAAAATAATAAAAACTTAATGAATAGTCGAATATTAAAAGTAATA ATGCATGAATATGGTCATTTAATGAAATTAGGGCATTGTAAACATGTATGTTTGATGTCT GTTATATGTTCGATAAGCGAACTTGATAACAGAACACTATATTGCTGTGAAAATTGTCTA AATCAAATTAGAGAAAAAAGTTCTACATCAGAGTCAGTGAAGAACTTGTTTGAGTTTTGA
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  • Fasta :-

    MIFLSLIGAFEPFISIDNLKFIVKNLQILTGKEIKFIKHAETNINLVMKGRCSVGNISGL KDYADLKEQSNPGNHHQISTNSMLEVLLKMKNKFITENSKNQMDSNFFLIGITSLDIFPT NNHEYVFGQSDPEKGIAIISAYRLYQNNKNLMNSRILKVIMHEYGHLMKLGHCKHVCLMS VICSISELDNRTLYCCENCLNQIREKSSTSESVKNLFEF

  • title: Zn binding site
  • coordinates: H162,H166,H172,C173,C177,C196,C199
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.30369208 SREKSSTSES0.997unspChro.30369212 SSTSESVKNL0.996unsp

Chro.30369      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India