Chro.30408 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004177      GO:0008270      

  • Computed_GO_Functions:  aminopeptidase activity      zinc ion binding      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.30408OTHER0.9999140.0000320.000054
No Results

  • Fasta :-

    >Chro.30408 MTKEFSDKFLEFLNNTGSPYHSVDETIKILKGSGFKKLDDNEEIKKGGKYYITLNYSTIL AFKVGEEFDLEDERSMVIITGSHTDSPCLRVRPSSITCNEGYTQLSVSTYGGGIWHTWFD RGLGIAGKVVDNACNEYLIKIKRPICAIPNLAIHLTTSEERSSFVYDKEKHLQPIISKTD TNDKYGEQLLSLPRSLLDEICREINVQPQNISSFDLCLMDSVDSRYVGINDEFIDSPRLD NLGGVFSCFTALIDASESNSSDLLISVAFDHEEVGSVSFSGAHSDFLKQSLKLILAGLEN SSLNNSTPKGMVNANRNSDLEFCKIMKRSIFLSVDMAHSIHPNYPERHQSKHKPSPNNGI VIKTNFNQAYTTDCTTRTFLKTIANNFNIKTQDFLVKNSSPCGSTIGPIVASNLGIRTAD IGACMLAMHSCREFMYYSDIYDLQNFIKVFYMTWSKVKLESKLLE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/707 Sequence name : 707 Sequence length : 465 VALUES OF COMPUTED PARAMETERS Coef20 : 3.369 CoefTot : -0.113 ChDiff : -9 ZoneTo : 3 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.118 0.205 0.464 MesoH : -0.384 0.322 -0.308 0.220 MuHd_075 : 16.844 8.047 4.061 2.821 MuHd_095 : 50.815 26.799 13.127 8.838 MuHd_100 : 47.583 24.386 12.454 7.680 MuHd_105 : 38.921 19.233 10.273 5.569 Hmax_075 : 4.667 5.017 -2.757 3.010 Hmax_095 : 18.113 11.550 1.920 5.005 Hmax_100 : 19.700 12.700 1.874 5.240 Hmax_105 : 16.900 10.000 1.619 4.420 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5759 0.4241 DFMC : 0.6815 0.3185
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 465 Chro.30408 MTKEFSDKFLEFLNNTGSPYHSVDETIKILKGSGFKKLDDNEEIKKGGKYYITLNYSTILAFKVGEEFDLEDERSMVIIT 80 GSHTDSPCLRVRPSSITCNEGYTQLSVSTYGGGIWHTWFDRGLGIAGKVVDNACNEYLIKIKRPICAIPNLAIHLTTSEE 160 RSSFVYDKEKHLQPIISKTDTNDKYGEQLLSLPRSLLDEICREINVQPQNISSFDLCLMDSVDSRYVGINDEFIDSPRLD 240 NLGGVFSCFTALIDASESNSSDLLISVAFDHEEVGSVSFSGAHSDFLKQSLKLILAGLENSSLNNSTPKGMVNANRNSDL 320 EFCKIMKRSIFLSVDMAHSIHPNYPERHQSKHKPSPNNGIVIKTNFNQAYTTDCTTRTFLKTIANNFNIKTQDFLVKNSS 400 PCGSTIGPIVASNLGIRTADIGACMLAMHSCREFMYYSDIYDLQNFIKVFYMTWSKVKLESKLLE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.30408 3 ----MTK|EF 0.073 . Chro.30408 8 TKEFSDK|FL 0.086 . Chro.30408 28 SVDETIK|IL 0.061 . Chro.30408 31 ETIKILK|GS 0.063 . Chro.30408 36 LKGSGFK|KL 0.069 . Chro.30408 37 KGSGFKK|LD 0.137 . Chro.30408 45 DDNEEIK|KG 0.068 . Chro.30408 46 DNEEIKK|GG 0.077 . Chro.30408 49 EIKKGGK|YY 0.062 . Chro.30408 63 STILAFK|VG 0.056 . Chro.30408 74 FDLEDER|SM 0.092 . Chro.30408 90 TDSPCLR|VR 0.086 . Chro.30408 92 SPCLRVR|PS 0.097 . Chro.30408 121 WHTWFDR|GL 0.130 . Chro.30408 128 GLGIAGK|VV 0.076 . Chro.30408 140 CNEYLIK|IK 0.060 . Chro.30408 142 EYLIKIK|RP 0.059 . Chro.30408 143 YLIKIKR|PI 0.210 . Chro.30408 161 LTTSEER|SS 0.101 . Chro.30408 168 SSFVYDK|EK 0.066 . Chro.30408 170 FVYDKEK|HL 0.070 . Chro.30408 178 LQPIISK|TD 0.056 . Chro.30408 184 KTDTNDK|YG 0.064 . Chro.30408 194 QLLSLPR|SL 0.102 . Chro.30408 202 LLDEICR|EI 0.086 . Chro.30408 225 MDSVDSR|YV 0.222 . Chro.30408 238 EFIDSPR|LD 0.079 . Chro.30408 288 AHSDFLK|QS 0.068 . Chro.30408 292 FLKQSLK|LI 0.068 . Chro.30408 309 LNNSTPK|GM 0.073 . Chro.30408 316 GMVNANR|NS 0.096 . Chro.30408 324 SDLEFCK|IM 0.062 . Chro.30408 327 EFCKIMK|RS 0.054 . Chro.30408 328 FCKIMKR|SI 0.248 . Chro.30408 347 HPNYPER|HQ 0.137 . Chro.30408 351 PERHQSK|HK 0.067 . Chro.30408 353 RHQSKHK|PS 0.068 . Chro.30408 363 NNGIVIK|TN 0.070 . Chro.30408 377 TTDCTTR|TF 0.085 . Chro.30408 381 TTRTFLK|TI 0.067 . Chro.30408 390 ANNFNIK|TQ 0.063 . Chro.30408 397 TQDFLVK|NS 0.083 . Chro.30408 417 ASNLGIR|TA 0.126 . Chro.30408 432 LAMHSCR|EF 0.095 . Chro.30408 448 DLQNFIK|VF 0.059 . Chro.30408 456 FYMTWSK|VK 0.050 . Chro.30408 458 MTWSKVK|LE 0.068 . Chro.30408 462 KVKLESK|LL 0.064 . ____________________________^_________________

  • Fasta :-

    >Chro.30408 ATGACAAAAGAGTTTTCTGATAAATTTCTCGAGTTTCTAAATAATACAGGTTCGCCATAT CACTCAGTAGATGAAACAATTAAGATACTTAAAGGGAGTGGGTTTAAAAAGTTGGATGAT AATGAGGAAATAAAAAAAGGAGGAAAATACTATATAACTTTAAACTATAGTACTATTTTA GCATTTAAAGTAGGGGAAGAATTTGATTTAGAAGATGAAAGGAGTATGGTGATTATAACA GGTTCACACACAGATAGTCCTTGTTTAAGAGTTAGACCGAGTTCTATAACTTGTAATGAA GGTTATACTCAATTGAGTGTTTCTACATATGGTGGAGGAATTTGGCATACATGGTTTGAT AGAGGTCTAGGAATTGCGGGAAAAGTGGTAGATAATGCATGCAATGAATATTTAATCAAA ATTAAAAGACCAATATGTGCAATTCCAAACTTAGCAATACATTTAACAACATCAGAGGAA AGATCTTCATTTGTATATGATAAGGAAAAGCATTTACAACCAATAATATCAAAGACAGAT ACAAATGATAAATATGGCGAACAACTTTTATCCCTTCCACGTAGTTTGCTTGATGAGATT TGCAGAGAAATTAATGTTCAACCTCAGAACATTTCATCATTTGATCTATGTTTGATGGAT TCAGTTGATTCTAGATATGTCGGTATTAATGATGAATTTATTGATTCTCCAAGACTTGAT AATCTTGGAGGTGTTTTTTCATGTTTTACAGCTTTAATTGATGCATCAGAATCAAATAGC AGTGATTTATTAATTTCTGTTGCATTTGACCATGAGGAAGTAGGAAGTGTCTCATTTTCA GGAGCTCACTCAGACTTTCTTAAACAAAGCCTAAAGTTAATTTTGGCTGGTTTGGAAAAT TCTAGTTTGAATAATTCAACACCTAAAGGAATGGTAAATGCTAATCGAAATTCTGACTTG GAATTCTGTAAGATAATGAAGAGATCTATCTTTTTGAGCGTTGATATGGCTCATTCAATA CACCCAAATTATCCCGAAAGACATCAATCAAAGCATAAACCTTCTCCAAATAATGGCATT GTAATTAAGACAAACTTTAATCAAGCTTATACAACAGACTGCACAACAAGAACATTCTTA AAGACTATTGCAAATAATTTCAATATAAAGACTCAAGATTTCCTAGTAAAAAATTCTTCT CCATGTGGTTCTACTATAGGCCCAATAGTTGCCTCCAATTTGGGAATTCGTACTGCCGAT ATTGGTGCATGCATGCTTGCAATGCATTCATGCAGGGAGTTCATGTACTACTCTGATATT TACGACTTGCAAAACTTTATTAAGGTATTTTACATGACTTGGTCAAAAGTAAAACTTGAA TCAAAACTACTAGAATAA
  • Download Fasta

  • Fasta :-

    MTKEFSDKFLEFLNNTGSPYHSVDETIKILKGSGFKKLDDNEEIKKGGKYYITLNYSTIL AFKVGEEFDLEDERSMVIITGSHTDSPCLRVRPSSITCNEGYTQLSVSTYGGGIWHTWFD RGLGIAGKVVDNACNEYLIKIKRPICAIPNLAIHLTTSEERSSFVYDKEKHLQPIISKTD TNDKYGEQLLSLPRSLLDEICREINVQPQNISSFDLCLMDSVDSRYVGINDEFIDSPRLD NLGGVFSCFTALIDASESNSSDLLISVAFDHEEVGSVSFSGAHSDFLKQSLKLILAGLEN SSLNNSTPKGMVNANRNSDLEFCKIMKRSIFLSVDMAHSIHPNYPERHQSKHKPSPNNGI VIKTNFNQAYTTDCTTRTFLKTIANNFNIKTQDFLVKNSSPCGSTIGPIVASNLGIRTAD IGACMLAMHSCREFMYYSDIYDLQNFIKVFYMTWSKVKLESKLLE

  • title: metal binding site
  • coordinates: H83,D240,E272,E273,D335,H429
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.3040895 SVRPSSITCN0.996unspChro.3040895 SVRPSSITCN0.996unspChro.3040895 SVRPSSITCN0.996unspChro.30408158 SHLTTSEERS0.994unspChro.304086 STKEFSDKFL0.992unspChro.3040822 SSPYHSVDET0.996unsp

Chro.30408      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India