_IDPredictionOTHERSPmTPCS_Position
Chro.40039OTHER0.9996090.0003160.000075
No Results
  • Fasta :-

    >Chro.40039 MSRRYDSRTTTFSPEGRLYQVEYALEAINNAAPTVGILCKEGVILGADKAIVSKLLDQGK SLEKIYTIDRHIIAAVAGLTADANILIAQARIDSQRYQYTYGEEQPVEQLVTQICDRKQS YTQFGGLRPFGVSFLFAGYDKNYGYQLYQSDPSGNFSGWKATAIGQNNQTATSLLKQEWN EDLTLEQGLHLVAKVLTKTMDTTSPTADKFEFSILTHNNESNKCSQKILSEKEIGELLEK VQKEIASENSAKNNSETDNQS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/472 Sequence name : 472 Sequence length : 261 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.225 ChDiff : -6 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.082 1.912 0.191 0.669 MesoH : -0.776 0.548 -0.369 0.251 MuHd_075 : 23.006 4.092 3.592 6.083 MuHd_095 : 14.149 3.671 2.859 2.333 MuHd_100 : 17.816 7.474 3.532 4.255 MuHd_105 : 18.758 9.543 3.671 5.499 Hmax_075 : -3.850 -5.250 -3.650 0.210 Hmax_095 : -2.187 -3.325 -2.391 -0.289 Hmax_100 : 9.800 0.700 0.016 2.170 Hmax_105 : -2.450 -3.967 -2.377 1.132 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9013 0.0987 DFMC : 0.8708 0.1292
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 261 Chro.40039 MSRRYDSRTTTFSPEGRLYQVEYALEAINNAAPTVGILCKEGVILGADKAIVSKLLDQGKSLEKIYTIDRHIIAAVAGLT 80 ADANILIAQARIDSQRYQYTYGEEQPVEQLVTQICDRKQSYTQFGGLRPFGVSFLFAGYDKNYGYQLYQSDPSGNFSGWK 160 ATAIGQNNQTATSLLKQEWNEDLTLEQGLHLVAKVLTKTMDTTSPTADKFEFSILTHNNESNKCSQKILSEKEIGELLEK 240 VQKEIASENSAKNNSETDNQS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40039 3 ----MSR|RY 0.085 . Chro.40039 4 ---MSRR|YD 0.173 . Chro.40039 8 SRRYDSR|TT 0.113 . Chro.40039 17 TFSPEGR|LY 0.096 . Chro.40039 40 TVGILCK|EG 0.060 . Chro.40039 49 VILGADK|AI 0.061 . Chro.40039 54 DKAIVSK|LL 0.077 . Chro.40039 60 KLLDQGK|SL 0.096 . Chro.40039 64 QGKSLEK|IY 0.059 . Chro.40039 70 KIYTIDR|HI 0.095 . Chro.40039 91 ILIAQAR|ID 0.107 . Chro.40039 96 ARIDSQR|YQ 0.124 . Chro.40039 117 VTQICDR|KQ 0.084 . Chro.40039 118 TQICDRK|QS 0.100 . Chro.40039 128 TQFGGLR|PF 0.094 . Chro.40039 141 LFAGYDK|NY 0.072 . Chro.40039 160 GNFSGWK|AT 0.075 . Chro.40039 176 TATSLLK|QE 0.059 . Chro.40039 194 GLHLVAK|VL 0.086 . Chro.40039 198 VAKVLTK|TM 0.064 . Chro.40039 209 TSPTADK|FE 0.075 . Chro.40039 223 HNNESNK|CS 0.078 . Chro.40039 227 SNKCSQK|IL 0.085 . Chro.40039 232 QKILSEK|EI 0.077 . Chro.40039 240 IGELLEK|VQ 0.051 . Chro.40039 243 LLEKVQK|EI 0.064 . Chro.40039 252 ASENSAK|NN 0.082 . ____________________________^_________________
  • Fasta :-

    >Chro.40039 ATGTCACGAAGATACGATTCTAGAACAACAACATTTTCTCCTGAAGGTCGATTATATCAA GTAGAATATGCATTGGAAGCAATTAATAATGCAGCTCCAACAGTTGGGATACTTTGTAAA GAAGGAGTAATTCTGGGAGCAGATAAGGCAATAGTATCAAAATTACTTGATCAAGGAAAG TCACTGGAGAAAATTTATACAATAGATCGTCATATTATAGCTGCTGTAGCTGGTTTGACA GCTGATGCAAATATTTTGATTGCCCAAGCACGTATAGACTCTCAAAGATATCAATATACA TATGGCGAAGAACAGCCAGTAGAACAATTAGTTACTCAAATATGCGATAGAAAACAAAGT TATACACAATTTGGTGGATTGAGACCATTTGGTGTATCATTTTTATTTGCTGGATATGAT AAGAATTATGGATACCAATTATATCAGTCTGATCCATCTGGTAACTTCTCGGGATGGAAG GCTACTGCGATTGGTCAAAATAACCAAACCGCTACATCTTTATTGAAACAAGAATGGAAC GAGGACTTAACATTAGAACAAGGTCTTCACTTAGTTGCAAAAGTTTTAACCAAGACTATG GATACAACTTCTCCTACAGCAGATAAATTTGAGTTTTCTATTTTGACTCACAATAATGAA TCTAATAAGTGCAGCCAGAAAATTTTGTCTGAAAAAGAAATTGGAGAATTGTTGGAAAAA GTCCAAAAAGAAATTGCTTCTGAAAATAGTGCTAAGAATAACTCTGAAACTGATAACCAG AGTTAA
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  • Fasta :-

    MSRRYDSRTTTFSPEGRLYQVEYALEAINNAAPTVGILCKEGVILGADKAIVSKLLDQGK SLEKIYTIDRHIIAAVAGLTADANILIAQARIDSQRYQYTYGEEQPVEQLVTQICDRKQS YTQFGGLRPFGVSFLFAGYDKNYGYQLYQSDPSGNFSGWKATAIGQNNQTATSLLKQEWN EDLTLEQGLHLVAKVLTKTMDTTSPTADKFEFSILTHNNESNKCSQKILSEKEIGELLEK VQKEIASENSAKNNSETDNQS

  • title: active site
  • coordinates: A32,D48,A50,K64,Q166
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
Chro.40039S20.5130.085Chro.40039S2610.5070.017
IDSitePositionGscoreIscoreIDSitePositionGscoreIscore
Chro.40039S20.5130.085Chro.40039S2610.5070.017
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.40039204 SMDTTSPTAD0.992unspChro.40039204 SMDTTSPTAD0.992unspChro.40039204 SMDTTSPTAD0.992unspChro.40039230 SQKILSEKEI0.996unspChro.40039255 SAKNNSETDN0.991unspChro.400397 SRRYDSRTTT0.995unspChro.4003913 STTTFSPEGR0.99unsp

Chro.40039      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India