Chro.40069 | 26S proteasome regulatory subunit S5A

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_IDPredictionOTHERSPmTPCS_Position
Chro.40069OTHER0.9999660.0000210.000012
No Results

  • Fasta :-

    >Chro.40069 MTLEATVICLDNSNYSRNGDYGTSRMLQQQDATNFISGIKTQQNPENLVGILSMAGERIE LRVTPTSDLSKTMHAMDGIRLNGKIDLLRGIQIAQLALKHRLNKNLRQRIVCFVGSPLED DLTEKQLEKLGKVLKKNNVSIDIISFGEILVNRERLQALVNAANNDNTSNFVEVAAPTNL TDALMASPIVLGEGTSSGVYADGLAGAAGETSGFEFGIDPNADPELYMALRMSMEEERNR QMRLEGNTGGNPSSTEPVNSAQGQSTTNNFDSIPTINEINAMEVDDELRQALLLSIQDFS GNDSTNNTNTSNQQQGTSTSENTSNTSTNPNQGNNAQAGNPSDPNSIEGLIQGIPGVDIN DPRIQDALRQLNKSDSEDKKDKQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/912 Sequence name : 912 Sequence length : 383 VALUES OF COMPUTED PARAMETERS Coef20 : 3.825 CoefTot : 0.122 ChDiff : -19 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.065 1.012 0.087 0.465 MesoH : -0.336 0.322 -0.314 0.264 MuHd_075 : 13.139 2.792 2.989 2.411 MuHd_095 : 10.449 2.023 3.807 2.170 MuHd_100 : 20.990 4.892 6.727 1.866 MuHd_105 : 27.051 8.036 8.464 2.013 Hmax_075 : 5.017 6.067 0.534 2.485 Hmax_095 : 0.437 2.900 -0.177 1.440 Hmax_100 : 7.100 5.700 0.990 2.250 Hmax_105 : 11.200 7.100 2.648 2.380 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9636 0.0364 DFMC : 0.8813 0.1187
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 383 Chro.40069 MTLEATVICLDNSNYSRNGDYGTSRMLQQQDATNFISGIKTQQNPENLVGILSMAGERIELRVTPTSDLSKTMHAMDGIR 80 LNGKIDLLRGIQIAQLALKHRLNKNLRQRIVCFVGSPLEDDLTEKQLEKLGKVLKKNNVSIDIISFGEILVNRERLQALV 160 NAANNDNTSNFVEVAAPTNLTDALMASPIVLGEGTSSGVYADGLAGAAGETSGFEFGIDPNADPELYMALRMSMEEERNR 240 QMRLEGNTGGNPSSTEPVNSAQGQSTTNNFDSIPTINEINAMEVDDELRQALLLSIQDFSGNDSTNNTNTSNQQQGTSTS 320 ENTSNTSTNPNQGNNAQAGNPSDPNSIEGLIQGIPGVDINDPRIQDALRQLNKSDSEDKKDKQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40069 17 DNSNYSR|NG 0.098 . Chro.40069 25 GDYGTSR|ML 0.113 . Chro.40069 40 NFISGIK|TQ 0.054 . Chro.40069 58 LSMAGER|IE 0.077 . Chro.40069 62 GERIELR|VT 0.081 . Chro.40069 71 PTSDLSK|TM 0.066 . Chro.40069 80 HAMDGIR|LN 0.089 . Chro.40069 84 GIRLNGK|ID 0.058 . Chro.40069 89 GKIDLLR|GI 0.103 . Chro.40069 99 IAQLALK|HR 0.055 . Chro.40069 101 QLALKHR|LN 0.086 . Chro.40069 104 LKHRLNK|NL 0.160 . Chro.40069 107 RLNKNLR|QR 0.091 . Chro.40069 109 NKNLRQR|IV 0.151 . Chro.40069 125 EDDLTEK|QL 0.067 . Chro.40069 129 TEKQLEK|LG 0.055 . Chro.40069 132 QLEKLGK|VL 0.070 . Chro.40069 135 KLGKVLK|KN 0.066 . Chro.40069 136 LGKVLKK|NN 0.093 . Chro.40069 153 GEILVNR|ER 0.083 . Chro.40069 155 ILVNRER|LQ 0.069 . Chro.40069 231 ELYMALR|MS 0.100 . Chro.40069 238 MSMEEER|NR 0.078 . Chro.40069 240 MEEERNR|QM 0.087 . Chro.40069 243 ERNRQMR|LE 0.424 . Chro.40069 289 EVDDELR|QA 0.067 . Chro.40069 363 VDINDPR|IQ 0.087 . Chro.40069 369 RIQDALR|QL 0.088 . Chro.40069 373 ALRQLNK|SD 0.082 . Chro.40069 379 KSDSEDK|KD 0.060 . Chro.40069 380 SDSEDKK|DK 0.153 . Chro.40069 382 SEDKKDK|Q- 0.072 . ____________________________^_________________

  • Fasta :-

    >Chro.40069 ATGACTTTGGAAGCAACAGTAATTTGTTTGGATAATTCAAACTATTCAAGAAATGGTGAC TACGGAACATCAAGAATGCTCCAACAGCAAGATGCAACTAACTTTATCTCTGGAATCAAA ACTCAGCAGAATCCAGAAAATCTTGTTGGAATACTATCAATGGCAGGCGAAAGAATTGAA TTGAGGGTAACACCAACATCAGATTTAAGTAAGACCATGCATGCAATGGATGGGATTCGG CTTAATGGGAAGATTGATCTTCTCAGAGGAATACAAATCGCACAATTGGCTCTTAAGCAT AGACTTAATAAAAATCTAAGGCAAAGAATTGTCTGTTTTGTTGGTAGTCCTCTAGAAGAC GACTTAACTGAGAAACAGCTAGAGAAGCTTGGAAAAGTTTTGAAAAAAAACAATGTTTCT ATTGATATTATTAGTTTTGGAGAGATTCTCGTGAATAGAGAAAGACTCCAAGCATTGGTA AATGCTGCAAATAATGATAATACCAGTAACTTCGTAGAGGTTGCTGCTCCTACAAACTTA ACTGATGCACTCATGGCATCTCCCATTGTTCTTGGAGAAGGAACTTCCTCTGGAGTTTAT GCAGATGGGCTTGCTGGAGCTGCTGGAGAAACTTCTGGATTTGAGTTTGGAATTGATCCT AACGCTGATCCTGAGCTTTATATGGCACTCAGGATGTCAATGGAGGAGGAAAGAAACCGT CAGATGAGGCTTGAAGGCAATACTGGAGGAAATCCCTCATCTACAGAGCCTGTTAACTCT GCACAAGGTCAATCAACAACCAATAACTTTGACTCTATCCCAACTATCAATGAGATTAAT GCTATGGAAGTTGATGACGAGCTTAGGCAAGCTCTTTTGCTCTCTATTCAAGACTTTTCT GGCAATGATTCCACCAATAACACTAATACTAGTAATCAGCAACAAGGTACATCCACTTCT GAAAATACATCTAATACTTCTACAAATCCTAACCAAGGGAATAATGCTCAAGCTGGAAAT CCAAGTGATCCAAACTCTATTGAAGGGCTTATTCAAGGAATCCCAGGAGTTGATATTAAT GATCCAAGAATCCAGGATGCTTTAAGACAGCTTAATAAGAGTGATTCAGAAGATAAAAAG GATAAACAATAG
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  • Fasta :-

    MTLEATVICLDNSNYSRNGDYGTSRMLQQQDATNFISGIKTQQNPENLVGILSMAGERIE LRVTPTSDLSKTMHAMDGIRLNGKIDLLRGIQIAQLALKHRLNKNLRQRIVCFVGSPLED DLTEKQLEKLGKVLKKNNVSIDIISFGEILVNRERLQALVNAANNDNTSNFVEVAAPTNL TDALMASPIVLGEGTSSGVYADGLAGAAGETSGFEFGIDPNADPELYMALRMSMEEERNR QMRLEGNTGGNPSSTEPVNSAQGQSTTNNFDSIPTINEINAMEVDDELRQALLLSIQDFS GNDSTNNTNTSNQQQGTSTSENTSNTSTNPNQGNNAQAGNPSDPNSIEGLIQGIPGVDIN DPRIQDALRQLNKSDSEDKKDKQ

    No Results
  • title: metal ion-dependent adhesion site (MIDAS)
  • coordinates: D11,I85,G115
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
Chro.40069T3190.5100.037Chro.40069T2670.5040.114Chro.40069T3230.5030.033
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
Chro.40069T3190.5100.037Chro.40069T2670.5040.114Chro.40069T3230.5030.033
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.40069233 SALRMSMEEE0.998unspChro.40069374 SQLNKSDSED0.997unsp

Chro.40069      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India