Chro.40249 | hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
Chro.40249SP0.0005970.9993940.000008CS pos: 17-18. IKG-KT. Pr: 0.8371
No Results

  • Fasta :-

    >Chro.40249 MNLLIFLITTLFAIIKGKTITLPLYGNVHKYGYYFIKVNVGFPISQQQTLIIDTGSSLTG FACSDCIYCGTHENKPFNINLSETSNIIKCKRNNTPNNETDIINKSIHGRIGMNYANYNE SFLNNKCVYDIKYSEGSRILGYFFEDFVEFENKLSSNLEIRQKFKNKFVFGCNIIENNFF KFQKASGIIGLANFSNKKMNQIINYIFKSGEVRKTDSDKIISIFFEKDGGKLTFGSTCFD QTKMMNYPFENYNITRCINDERYCAYISKVEVDSNTRELDTKLNENLFKAIFDTGTTISI FPARLFKKITRGLFNNVSKYYPKISGYDEKDGLTCWRMLNGISTDKFPNIKVVFKNNRNK LTEQLVINWPPESYLYLNKILEGNIKVYCLGIASDNLINSEIGANKNGENSSSNEIILGA TFFIYKEITFILNEDKIMIRYNYLNSKNRNGILPKTTNNFRHKLNNSNSDIGGTNYYEGK LKNTHIRDVHKNLLSKILVKRYVVLKNENYEIWGGLISSSLIIAILFSFLIIFHKFFRKL NFSEKNNYGI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/12 Sequence name : 12 Sequence length : 550 VALUES OF COMPUTED PARAMETERS Coef20 : 4.617 CoefTot : -2.585 ChDiff : 21 ZoneTo : 52 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.476 2.729 0.527 0.894 MesoH : 0.213 0.599 -0.160 0.348 MuHd_075 : 19.759 16.803 6.474 4.336 MuHd_095 : 26.828 21.715 8.554 6.436 MuHd_100 : 28.244 19.243 8.607 5.930 MuHd_105 : 29.910 20.586 8.874 6.656 Hmax_075 : 17.100 18.300 3.511 5.970 Hmax_095 : 14.700 15.225 2.979 6.029 Hmax_100 : 13.700 12.900 2.433 5.490 Hmax_105 : 9.500 10.400 0.327 5.140 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7638 0.2362 DFMC : 0.8052 0.1948
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 550 Chro.40249 MNLLIFLITTLFAIIKGKTITLPLYGNVHKYGYYFIKVNVGFPISQQQTLIIDTGSSLTGFACSDCIYCGTHENKPFNIN 80 LSETSNIIKCKRNNTPNNETDIINKSIHGRIGMNYANYNESFLNNKCVYDIKYSEGSRILGYFFEDFVEFENKLSSNLEI 160 RQKFKNKFVFGCNIIENNFFKFQKASGIIGLANFSNKKMNQIINYIFKSGEVRKTDSDKIISIFFEKDGGKLTFGSTCFD 240 QTKMMNYPFENYNITRCINDERYCAYISKVEVDSNTRELDTKLNENLFKAIFDTGTTISIFPARLFKKITRGLFNNVSKY 320 YPKISGYDEKDGLTCWRMLNGISTDKFPNIKVVFKNNRNKLTEQLVINWPPESYLYLNKILEGNIKVYCLGIASDNLINS 400 EIGANKNGENSSSNEIILGATFFIYKEITFILNEDKIMIRYNYLNSKNRNGILPKTTNNFRHKLNNSNSDIGGTNYYEGK 480 LKNTHIRDVHKNLLSKILVKRYVVLKNENYEIWGGLISSSLIIAILFSFLIIFHKFFRKLNFSEKNNYGI 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ...................................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.40249 16 TLFAIIK|GK 0.069 . Chro.40249 18 FAIIKGK|TI 0.065 . Chro.40249 30 LYGNVHK|YG 0.064 . Chro.40249 37 YGYYFIK|VN 0.062 . Chro.40249 75 CGTHENK|PF 0.064 . Chro.40249 89 ETSNIIK|CK 0.065 . Chro.40249 91 SNIIKCK|RN 0.070 . Chro.40249 92 NIIKCKR|NN 0.169 . Chro.40249 105 ETDIINK|SI 0.082 . Chro.40249 110 NKSIHGR|IG 0.116 . Chro.40249 126 ESFLNNK|CV 0.075 . Chro.40249 132 KCVYDIK|YS 0.069 . Chro.40249 138 KYSEGSR|IL 0.102 . Chro.40249 153 FVEFENK|LS 0.061 . Chro.40249 161 SSNLEIR|QK 0.111 . Chro.40249 163 NLEIRQK|FK 0.068 . Chro.40249 165 EIRQKFK|NK 0.069 . Chro.40249 167 RQKFKNK|FV 0.110 . Chro.40249 181 IENNFFK|FQ 0.081 . Chro.40249 184 NFFKFQK|AS 0.079 . Chro.40249 197 LANFSNK|KM 0.081 . Chro.40249 198 ANFSNKK|MN 0.089 . Chro.40249 208 IINYIFK|SG 0.085 . Chro.40249 213 FKSGEVR|KT 0.094 . Chro.40249 214 KSGEVRK|TD 0.119 . Chro.40249 219 RKTDSDK|II 0.075 . Chro.40249 227 ISIFFEK|DG 0.083 . Chro.40249 231 FEKDGGK|LT 0.059 . Chro.40249 243 TCFDQTK|MM 0.064 . Chro.40249 256 ENYNITR|CI 0.118 . Chro.40249 262 RCINDER|YC 0.086 . Chro.40249 269 YCAYISK|VE 0.058 . Chro.40249 277 EVDSNTR|EL 0.077 . Chro.40249 282 TRELDTK|LN 0.072 . Chro.40249 289 LNENLFK|AI 0.092 . Chro.40249 304 ISIFPAR|LF 0.125 . Chro.40249 307 FPARLFK|KI 0.188 . Chro.40249 308 PARLFKK|IT 0.124 . Chro.40249 311 LFKKITR|GL 0.094 . Chro.40249 319 LFNNVSK|YY 0.071 . Chro.40249 323 VSKYYPK|IS 0.075 . Chro.40249 330 ISGYDEK|DG 0.075 . Chro.40249 337 DGLTCWR|ML 0.086 . Chro.40249 346 NGISTDK|FP 0.059 . Chro.40249 351 DKFPNIK|VV 0.070 . Chro.40249 355 NIKVVFK|NN 0.070 . Chro.40249 358 VVFKNNR|NK 0.077 . Chro.40249 360 FKNNRNK|LT 0.076 . Chro.40249 379 SYLYLNK|IL 0.064 . Chro.40249 386 ILEGNIK|VY 0.062 . Chro.40249 406 SEIGANK|NG 0.059 . Chro.40249 426 ATFFIYK|EI 0.064 . Chro.40249 436 FILNEDK|IM 0.054 . Chro.40249 440 EDKIMIR|YN 0.074 . Chro.40249 447 YNYLNSK|NR 0.064 . Chro.40249 449 YLNSKNR|NG 0.078 . Chro.40249 455 RNGILPK|TT 0.069 . Chro.40249 461 KTTNNFR|HK 0.069 . Chro.40249 463 TNNFRHK|LN 0.070 . Chro.40249 480 TNYYEGK|LK 0.073 . Chro.40249 482 YYEGKLK|NT 0.064 . Chro.40249 487 LKNTHIR|DV 0.360 . Chro.40249 491 HIRDVHK|NL 0.066 . Chro.40249 496 HKNLLSK|IL 0.061 . Chro.40249 500 LSKILVK|RY 0.056 . Chro.40249 501 SKILVKR|YV 0.264 . Chro.40249 506 KRYVVLK|NE 0.068 . Chro.40249 535 FLIIFHK|FF 0.069 . Chro.40249 538 IFHKFFR|KL 0.122 . Chro.40249 539 FHKFFRK|LN 0.081 . Chro.40249 545 KLNFSEK|NN 0.073 . ____________________________^_________________

  • Fasta :-

    >Chro.40249 ATGAACCTTTTAATTTTTTTGATTACAACCTTATTCGCAATTATTAAGGGAAAAACGATC ACATTACCCTTGTATGGAAATGTACACAAATATGGTTATTACTTTATTAAAGTTAATGTG GGATTTCCAATTAGTCAGCAGCAGACTCTTATTATAGATACGGGAAGCTCTCTTACTGGC TTTGCATGTTCAGATTGTATTTACTGTGGAACACATGAAAATAAGCCATTTAATATTAAT TTATCAGAAACTAGTAATATTATTAAATGTAAGAGAAACAATACTCCAAATAACGAAACA GATATAATAAATAAAAGTATTCATGGAAGAATCGGTATGAATTATGCCAATTATAATGAG AGTTTTCTGAACAACAAATGCGTTTACGATATTAAATATTCAGAAGGTAGCCGTATACTT GGATACTTTTTTGAGGACTTTGTTGAATTTGAAAATAAACTGTCATCCAACTTGGAAATT AGACAGAAATTTAAGAATAAGTTCGTTTTCGGATGTAATATCATTGAAAATAACTTTTTT AAATTTCAAAAAGCATCAGGTATAATAGGCCTTGCCAACTTCAGTAATAAAAAAATGAAT CAAATAATCAACTATATTTTCAAAAGTGGTGAAGTAAGAAAAACTGATTCTGATAAAATA ATTTCAATTTTTTTTGAAAAAGATGGAGGAAAGTTAACTTTTGGGTCTACCTGCTTTGAT CAAACTAAAATGATGAATTATCCATTTGAAAATTATAATATTACGAGGTGTATTAATGAT GAAAGGTACTGTGCTTATATAAGCAAAGTTGAAGTTGATTCAAATACCCGTGAATTAGAT ACCAAATTAAATGAAAATTTGTTCAAAGCAATTTTTGATACAGGAACTACAATTTCAATT TTTCCTGCTAGATTATTTAAAAAAATTACCAGAGGTCTGTTTAATAATGTTTCAAAATAC TATCCAAAAATTTCTGGGTATGATGAAAAAGATGGTCTTACATGCTGGAGAATGCTTAAC GGGATTTCAACTGATAAATTTCCTAATATTAAAGTTGTGTTCAAAAATAATAGAAATAAA TTGACGGAACAGTTAGTAATAAACTGGCCCCCAGAGTCTTATTTATACTTAAATAAAATT TTAGAAGGTAATATTAAAGTTTATTGTTTAGGAATAGCAAGTGATAACTTGATAAATTCA GAAATAGGGGCGAATAAGAATGGAGAAAACTCCTCTAGTAACGAAATAATACTTGGTGCT ACTTTTTTTATTTACAAAGAGATCACTTTTATTTTGAATGAAGATAAAATCATGATAAGA TATAACTATCTAAATTCTAAAAATAGAAACGGCATCTTACCAAAAACTACAAATAATTTC CGACACAAATTAAATAACTCTAATTCCGATATAGGAGGCACAAACTATTATGAAGGAAAA TTGAAGAATACCCACATAAGGGATGTTCACAAAAATTTATTATCCAAAATACTGGTAAAA AGATATGTCGTTTTAAAAAACGAAAATTATGAGATTTGGGGGGGGTTAATTTCTTCATCT CTAATAATAGCTATTTTATTTTCCTTTTTAATAATATTCCACAAGTTCTTTAGAAAATTA AATTTTTCAGAAAAAAACAATTATGGAATTTAG
  • Download Fasta

  • Fasta :-

    MNLLIFLITTLFAIIKGKTITLPLYGNVHKYGYYFIKVNVGFPISQQQTLIIDTGSSLTG FACSDCIYCGTHENKPFNINLSETSNIIKCKRNNTPNNETDIINKSIHGRIGMNYANYNE SFLNNKCVYDIKYSEGSRILGYFFEDFVEFENKLSSNLEIRQKFKNKFVFGCNIIENNFF KFQKASGIIGLANFSNKKMNQIINYIFKSGEVRKTDSDKIISIFFEKDGGKLTFGSTCFD QTKMMNYPFENYNITRCINDERYCAYISKVEVDSNTRELDTKLNENLFKAIFDTGTTISI FPARLFKKITRGLFNNVSKYYPKISGYDEKDGLTCWRMLNGISTDKFPNIKVVFKNNRNK LTEQLVINWPPESYLYLNKILEGNIKVYCLGIASDNLINSEIGANKNGENSSSNEIILGA TFFIYKEITFILNEDKIMIRYNYLNSKNRNGILPKTTNNFRHKLNNSNSDIGGTNYYEGK LKNTHIRDVHKNLLSKILVKRYVVLKNENYEIWGGLISSSLIIAILFSFLIIFHKFFRKL NFSEKNNYGI

  • title: inhibitor binding site
  • coordinates: D53,G55,S57,D130,I131,K132,I188
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.40249325 SYPKISGYDE0.994unspChro.40249543 SKLNFSEKNN0.994unsp

Chro.40249      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India