Chro.50031 | mitochondrial processing peptidase beta subunit

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.50031mTP0.1853390.0008900.813771CS pos: 28-29. ARF-NS. Pr: 0.3628
No Results

  • Fasta :-

    >Chro.50031 MSLILKNSILKLGCSNLLRVLPTRYARFNSTLSFKRNDPDLKISKLSNGMRVATMKFGID SIPNSLTFGLWVDSGSRNEDPGKNGIAHFLEHLIFKGTYNRSRKEIESQIEDLGAHLNAY TTREQTVYQIRCFNQDLPKCMDLLSDIIKNSKFCKSAIEQEKGVVLREMEEVSKSEEEII FDDLHREMYKNHPLGNTILGPKENILGFKREDLINYIRTNYIPEKMMILGVGNIDHSSFK NIAETYFGNDSNNSRNLLGLKGYKNTNLPNSQYLNEINSDKNHPVLVHKKNNSDGKTLLA MAYNGTSWNSKDFLKVMFLQSMLGEYGTNNINRVTGYKNQIIERILSGIKDHVEFFETFN TCYKDTGKLYLYSSS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/49 Sequence name : 49 Sequence length : 375 VALUES OF COMPUTED PARAMETERS Coef20 : 4.599 CoefTot : 0.682 ChDiff : 6 ZoneTo : 37 KR : 7 DE : 0 CleavSite : 38 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.347 0.982 -0.158 0.435 MesoH : -1.082 -0.016 -0.521 0.077 MuHd_075 : 32.040 25.407 12.846 7.888 MuHd_095 : 35.455 24.415 10.104 8.899 MuHd_100 : 26.062 20.055 7.411 7.853 MuHd_105 : 19.982 17.919 6.454 5.970 Hmax_075 : 19.367 26.717 6.553 7.455 Hmax_095 : 13.500 17.500 4.072 5.430 Hmax_100 : 9.400 13.200 1.728 5.080 Hmax_105 : 13.200 14.233 2.523 5.693 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0327 0.9673 DFMC : 0.0478 0.9522 This protein is probably imported in mitochondria. f(Ser) = 0.1351 f(Arg) = 0.1081 CMi = 0.61050 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 375 Chro.50031 MSLILKNSILKLGCSNLLRVLPTRYARFNSTLSFKRNDPDLKISKLSNGMRVATMKFGIDSIPNSLTFGLWVDSGSRNED 80 PGKNGIAHFLEHLIFKGTYNRSRKEIESQIEDLGAHLNAYTTREQTVYQIRCFNQDLPKCMDLLSDIIKNSKFCKSAIEQ 160 EKGVVLREMEEVSKSEEEIIFDDLHREMYKNHPLGNTILGPKENILGFKREDLINYIRTNYIPEKMMILGVGNIDHSSFK 240 NIAETYFGNDSNNSRNLLGLKGYKNTNLPNSQYLNEINSDKNHPVLVHKKNNSDGKTLLAMAYNGTSWNSKDFLKVMFLQ 320 SMLGEYGTNNINRVTGYKNQIIERILSGIKDHVEFFETFNTCYKDTGKLYLYSSS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.50031 6 -MSLILK|NS 0.061 . Chro.50031 11 LKNSILK|LG 0.058 . Chro.50031 19 GCSNLLR|VL 0.080 . Chro.50031 24 LRVLPTR|YA 0.103 . Chro.50031 27 LPTRYAR|FN 0.305 . Chro.50031 35 NSTLSFK|RN 0.068 . Chro.50031 36 STLSFKR|ND 0.122 . Chro.50031 42 RNDPDLK|IS 0.057 . Chro.50031 45 PDLKISK|LS 0.057 . Chro.50031 51 KLSNGMR|VA 0.123 . Chro.50031 56 MRVATMK|FG 0.091 . Chro.50031 77 WVDSGSR|NE 0.071 . Chro.50031 83 RNEDPGK|NG 0.065 . Chro.50031 96 LEHLIFK|GT 0.066 . Chro.50031 101 FKGTYNR|SR 0.128 . Chro.50031 103 GTYNRSR|KE 0.086 . Chro.50031 104 TYNRSRK|EI 0.469 . Chro.50031 123 LNAYTTR|EQ 0.098 . Chro.50031 131 QTVYQIR|CF 0.090 . Chro.50031 139 FNQDLPK|CM 0.060 . Chro.50031 149 LLSDIIK|NS 0.062 . Chro.50031 152 DIIKNSK|FC 0.065 . Chro.50031 155 KNSKFCK|SA 0.260 . Chro.50031 162 SAIEQEK|GV 0.082 . Chro.50031 167 EKGVVLR|EM 0.116 . Chro.50031 174 EMEEVSK|SE 0.077 . Chro.50031 186 IFDDLHR|EM 0.075 . Chro.50031 190 LHREMYK|NH 0.060 . Chro.50031 202 NTILGPK|EN 0.058 . Chro.50031 209 ENILGFK|RE 0.057 . Chro.50031 210 NILGFKR|ED 0.097 . Chro.50031 218 DLINYIR|TN 0.082 . Chro.50031 225 TNYIPEK|MM 0.073 . Chro.50031 240 IDHSSFK|NI 0.068 . Chro.50031 255 NDSNNSR|NL 0.085 . Chro.50031 261 RNLLGLK|GY 0.054 . Chro.50031 264 LGLKGYK|NT 0.057 . Chro.50031 281 NEINSDK|NH 0.057 . Chro.50031 289 HPVLVHK|KN 0.069 . Chro.50031 290 PVLVHKK|NN 0.119 . Chro.50031 296 KNNSDGK|TL 0.069 . Chro.50031 311 GTSWNSK|DF 0.088 . Chro.50031 315 NSKDFLK|VM 0.059 . Chro.50031 333 GTNNINR|VT 0.134 . Chro.50031 338 NRVTGYK|NQ 0.061 . Chro.50031 344 KNQIIER|IL 0.121 . Chro.50031 350 RILSGIK|DH 0.057 . Chro.50031 364 TFNTCYK|DT 0.087 . Chro.50031 368 CYKDTGK|LY 0.054 . ____________________________^_________________

  • Fasta :-

    >Chro.50031 ATGAGCTTAATTTTAAAAAACTCCATACTAAAACTTGGATGTTCAAATTTGTTACGAGTA TTGCCTACTAGATATGCAAGATTTAACAGCACTCTGAGTTTTAAAAGAAATGATCCAGAT TTAAAGATCTCCAAACTCTCAAATGGGATGAGAGTTGCAACCATGAAGTTTGGAATTGAC AGTATTCCTAATTCTCTAACTTTTGGACTATGGGTAGATTCTGGAAGTAGAAATGAAGAC CCAGGAAAAAATGGGATTGCTCACTTTTTGGAACATCTCATATTTAAAGGTACATACAAT AGATCTAGAAAAGAAATTGAAAGCCAAATTGAAGACTTAGGTGCCCATTTGAATGCATAT ACTACTCGCGAACAAACGGTTTATCAAATCAGATGCTTTAATCAAGACCTACCAAAGTGC ATGGATCTTTTGAGTGATATTATTAAAAACTCCAAATTTTGTAAATCTGCTATTGAACAA GAAAAAGGAGTTGTCTTAAGAGAAATGGAAGAAGTAAGCAAATCTGAAGAAGAGATTATT TTTGATGATTTACATAGAGAAATGTATAAGAATCATCCACTTGGAAATACTATTCTTGGT CCAAAAGAAAATATTCTTGGATTCAAAAGAGAAGATTTGATCAATTATATACGTACTAAT TATATTCCAGAGAAAATGATGATTCTAGGAGTTGGTAATATTGACCATAGTTCTTTTAAG AATATTGCTGAAACTTATTTTGGAAATGATTCAAATAACTCCAGAAATCTACTTGGTTTA AAGGGATATAAAAATACTAATTTACCCAATTCTCAATATTTGAACGAAATTAACTCTGAT AAAAATCATCCTGTATTAGTACACAAAAAAAACAATAGTGATGGAAAGACTCTTCTTGCT ATGGCATACAATGGTACATCTTGGAATTCCAAAGATTTTCTTAAAGTTATGTTTCTCCAA AGTATGCTAGGGGAATATGGAACCAATAATATTAATAGAGTAACTGGATATAAAAACCAA ATTATTGAAAGAATTCTTTCTGGTATTAAAGACCATGTTGAATTCTTTGAAACTTTTAAT ACTTGTTATAAAGATACAGGTAAGTTATATCTTTATTCCTCTTCTTAA
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  • Fasta :-

    MSLILKNSILKLGCSNLLRVLPTRYARFNSTLSFKRNDPDLKISKLSNGMRVATMKFGID SIPNSLTFGLWVDSGSRNEDPGKNGIAHFLEHLIFKGTYNRSRKEIESQIEDLGAHLNAY TTREQTVYQIRCFNQDLPKCMDLLSDIIKNSKFCKSAIEQEKGVVLREMEEVSKSEEEII FDDLHREMYKNHPLGNTILGPKENILGFKREDLINYIRTNYIPEKMMILGVGNIDHSSFK NIAETYFGNDSNNSRNLLGLKGYKNTNLPNSQYLNEINSDKNHPVLVHKKNNSDGKTLLA MAYNGTSWNSKDFLKVMFLQSMLGEYGTNNINRVTGYKNQIIERILSGIKDHVEFFETFN TCYKDTGKLYLYSSS

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.50031108 SKEIESQIED0.992unspChro.50031108 SKEIESQIED0.992unspChro.50031108 SKEIESQIED0.992unspChro.50031173 SMEEVSKSEE0.992unspChro.50031175 SEVSKSEEEI0.997unspChro.5003133 SNSTLSFKRN0.996unspChro.50031102 STYNRSRKEI0.991unsp

Chro.50031      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India