Chro.50143 | hypothetical protein

UniProt_ID:

Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs: GO:0036459 GO:0008270
Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity zinc ion binding
Computed_GO_Process_IDs: GO:0016579
Computed_GO_Processes: protein deubiquitination
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	Chro.50143	OTHER	0.999927	0.000052	0.000021

No Results

Fasta :-
>Chro.50143 MGDHSEKDGERCPYLSSIKRSVLDFDYEKICSVTLREEHIYCCLVCGINYQGKGKGSMAY KHSLELKHHLFINLTNSSIICLPNDYEIYEHSLEDIKGYLQPRFNSEIISSSLYDVSRTF DGIEFFPGFIGLSNFGNNDSLNSIILILSRITEFRDLCLSYQLYSKEIEKRIPDPLLFSI IESIQKIYNPNNLKGKFSPYNLVKIIEKKSNGKFSFSKISNISTSSNSFIQSNVGTQNST IIDPMALFSWITYNLKKKIDKYLRKFQIKFIPDIDKNTNKSNMNIIDVCIKGKLYNKASK YPNNKKSESSTDNLMKSKKCPELKSTASICFNCLSLTLPSIIETTMGISNSAQSNEDKTI SQIPIYQLLDSKFFSSTSQLISKLPYYLFIHFSRFSKANLNLEKNKTLVSFPLIDLDLSS YIHPD
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/767 Sequence name : 767 Sequence length : 425 VALUES OF COMPUTED PARAMETERS Coef20 : 3.142 CoefTot : -0.250 ChDiff : 9 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.541 1.506 0.360 0.549 MesoH : -0.159 0.279 -0.290 0.209 MuHd_075 : 15.411 5.008 2.227 4.161 MuHd_095 : 33.106 7.645 8.198 3.810 MuHd_100 : 32.179 13.793 9.395 3.840 MuHd_105 : 29.587 18.171 10.222 4.770 Hmax_075 : 0.933 -0.350 -2.350 1.960 Hmax_095 : 7.875 -0.100 1.272 1.286 Hmax_100 : 8.400 2.700 1.573 1.650 Hmax_105 : 9.333 4.550 2.930 2.322 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9356 0.0644 DFMC : 0.9333 0.0667

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 425 Chro.50143 MGDHSEKDGERCPYLSSIKRSVLDFDYEKICSVTLREEHIYCCLVCGINYQGKGKGSMAYKHSLELKHHLFINLTNSSII 80 CLPNDYEIYEHSLEDIKGYLQPRFNSEIISSSLYDVSRTFDGIEFFPGFIGLSNFGNNDSLNSIILILSRITEFRDLCLS 160 YQLYSKEIEKRIPDPLLFSIIESIQKIYNPNNLKGKFSPYNLVKIIEKKSNGKFSFSKISNISTSSNSFIQSNVGTQNST 240 IIDPMALFSWITYNLKKKIDKYLRKFQIKFIPDIDKNTNKSNMNIIDVCIKGKLYNKASKYPNNKKSESSTDNLMKSKKC 320 PELKSTASICFNCLSLTLPSIIETTMGISNSAQSNEDKTISQIPIYQLLDSKFFSSTSQLISKLPYYLFIHFSRFSKANL 400 NLEKNKTLVSFPLIDLDLSSYIHPD 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.50143 7 MGDHSEK|DG 0.069 . Chro.50143 11 SEKDGER|CP 0.064 . Chro.50143 19 PYLSSIK|RS 0.050 . Chro.50143 20 YLSSIKR|SV 0.420 . Chro.50143 29 LDFDYEK|IC 0.062 . Chro.50143 36 ICSVTLR|EE 0.103 . Chro.50143 53 GINYQGK|GK 0.081 . Chro.50143 55 NYQGKGK|GS 0.077 . Chro.50143 61 KGSMAYK|HS 0.072 . Chro.50143 67 KHSLELK|HH 0.066 . Chro.50143 97 HSLEDIK|GY 0.057 . Chro.50143 103 KGYLQPR|FN 0.136 . Chro.50143 118 SLYDVSR|TF 0.122 . Chro.50143 150 IILILSR|IT 0.073 . Chro.50143 155 SRITEFR|DL 0.139 . Chro.50143 166 SYQLYSK|EI 0.069 . Chro.50143 170 YSKEIEK|RI 0.058 . Chro.50143 171 SKEIEKR|IP 0.225 . Chro.50143 186 IIESIQK|IY 0.057 . Chro.50143 194 YNPNNLK|GK 0.056 . Chro.50143 196 PNNLKGK|FS 0.078 . Chro.50143 204 SPYNLVK|II 0.082 . Chro.50143 208 LVKIIEK|KS 0.059 . Chro.50143 209 VKIIEKK|SN 0.176 . Chro.50143 213 EKKSNGK|FS 0.070 . Chro.50143 218 GKFSFSK|IS 0.066 . Chro.50143 256 WITYNLK|KK 0.055 . Chro.50143 257 ITYNLKK|KI 0.147 . Chro.50143 258 TYNLKKK|ID 0.099 . Chro.50143 261 LKKKIDK|YL 0.074 . Chro.50143 264 KIDKYLR|KF 0.072 . Chro.50143 265 IDKYLRK|FQ 0.102 . Chro.50143 269 LRKFQIK|FI 0.096 . Chro.50143 276 FIPDIDK|NT 0.063 . Chro.50143 280 IDKNTNK|SN 0.094 . Chro.50143 291 IIDVCIK|GK 0.056 . Chro.50143 293 DVCIKGK|LY 0.065 . Chro.50143 297 KGKLYNK|AS 0.053 . Chro.50143 300 LYNKASK|YP 0.066 . Chro.50143 305 SKYPNNK|KS 0.067 . Chro.50143 306 KYPNNKK|SE 0.116 . Chro.50143 316 STDNLMK|SK 0.078 . Chro.50143 318 DNLMKSK|KC 0.060 . Chro.50143 319 NLMKSKK|CP 0.102 . Chro.50143 324 KKCPELK|ST 0.084 . Chro.50143 358 AQSNEDK|TI 0.090 . Chro.50143 372 YQLLDSK|FF 0.057 . Chro.50143 383 TSQLISK|LP 0.062 . Chro.50143 394 LFIHFSR|FS 0.117 . Chro.50143 397 HFSRFSK|AN 0.139 . Chro.50143 404 ANLNLEK|NK 0.055 . Chro.50143 406 LNLEKNK|TL 0.059 . ____________________________^_________________

Fasta :-
>Chro.50143 ATGGGTGACCACTCTGAGAAAGATGGAGAGAGATGTCCGTACTTATCTAGCATTAAAAGA AGTGTGTTAGACTTTGACTATGAGAAAATCTGCAGCGTGACATTAAGGGAGGAACATATA TACTGTTGTCTAGTATGTGGAATAAATTACCAGGGGAAAGGAAAGGGTTCTATGGCATAT AAGCACTCTCTAGAACTAAAGCACCATTTATTTATTAATTTAACTAACTCAAGCATAATT TGTCTTCCAAACGATTACGAGATTTATGAACATTCTCTTGAAGATATTAAAGGATACCTA CAGCCAAGATTTAATTCTGAGATCATCTCCTCATCGCTATATGACGTGTCAAGAACTTTT GATGGGATTGAGTTTTTTCCAGGATTTATTGGTTTGAGTAATTTTGGTAATAATGACTCT TTAAATTCAATCATTTTAATATTATCTCGAATCACTGAATTTAGAGACTTATGTCTTAGT TACCAGCTTTATAGCAAGGAAATTGAGAAAAGAATTCCAGATCCACTTTTATTCAGTATT ATTGAGTCGATTCAAAAAATCTATAATCCAAATAATCTTAAAGGGAAATTTTCTCCATAT AACCTTGTAAAAATTATAGAGAAGAAATCTAATGGAAAATTTTCATTTTCAAAAATATCC AATATTTCAACATCTTCTAATTCATTCATACAATCAAATGTTGGTACCCAAAACTCAACA ATAATTGATCCAATGGCACTATTTTCTTGGATAACATATAATTTAAAGAAAAAGATCGAC AAATATCTCAGAAAATTTCAAATTAAATTCATTCCAGATATTGATAAGAATACTAATAAA TCCAATATGAATATTATTGATGTATGCATTAAGGGAAAACTATACAACAAAGCCAGTAAA TATCCAAATAACAAAAAATCTGAATCTAGTACAGATAATTTAATGAAATCTAAAAAATGC CCTGAATTAAAATCTACTGCAAGTATTTGTTTTAACTGCCTATCTCTAACTCTACCTTCA ATTATTGAAACTACAATGGGTATATCAAATAGCGCTCAAAGTAATGAAGATAAGACAATT TCCCAGATACCAATATATCAGCTACTAGACTCCAAGTTCTTCTCTTCCACTTCCCAATTA ATATCGAAACTACCTTATTACTTATTTATTCATTTTTCCAGATTTTCCAAGGCTAATTTA AATCTGGAAAAAAACAAAACTTTGGTTTCTTTCCCGCTTATAGACTTAGATCTTTCTTCA TATATTCATCCAGATTAA
Download Fasta

Fasta :-

MGDHSEKDGERCPYLSSIKRSVLDFDYEKICSVTLREEHIYCCLVCGINYQGKGKGSMAY KHSLELKHHLFINLTNSSIICLPNDYEIYEHSLEDIKGYLQPRFNSEIISSSLYDVSRTF DGIEFFPGFIGLSNFGNNDSLNSIILILSRITEFRDLCLSYQLYSKEIEKRIPDPLLFSI IESIQKIYNPNNLKGKFSPYNLVKIIEKKSNGKFSFSKISNISTSSNSFIQSNVGTQNST IIDPMALFSWITYNLKKKIDKYLRKFQIKFIPDIDKNTNKSNMNIIDVCIKGKLYNKASK YPNNKKSESSTDNLMKSKKCPELKSTASICFNCLSLTLPSIIETTMGISNSAQSNEDKTI SQIPIYQLLDSKFFSSTSQLISKLPYYLFIHFSRFSKANLNLEKNKTLVSFPLIDLDLSS YIHPD

Zf-UBP

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	Chro.50143	92 S	IYEHSLEDI	0.991	unsp	Chro.50143	92 S	IYEHSLEDI	0.991	unsp	Chro.50143	92 S	IYEHSLEDI	0.991	unsp	Chro.50143	307 S	NNKKSESST	0.992	unsp	Chro.50143	309 S	KKSESSTDN	0.996	unsp	Chro.50143	317 S	NLMKSKKCP	0.994	unsp	Chro.50143	354 S	NSAQSNEDK	0.997	unsp	Chro.50143	5 S	MGDHSEKDG	0.998	unsp	Chro.50143	21 S	SIKRSVLDF	0.993	unsp

Chro.50143 | hypothetical protein

ID's

UniProt_ID:

GEO Functions

Computed_GO_Component_IDs:

Computed_GO_Components:

Computed_GO_Function_IDs: GO:0036459 GO:0008270

Computed_GO_Functions: thiol-dependent ubiquitinyl hydrolase activity zinc ion binding

Computed_GO_Process_IDs: GO:0016579

Computed_GO_Processes: protein deubiquitination

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Zf-UBP

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

Chro.50143

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India