Chro.50185 | hypothetical protein

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

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_IDPredictionOTHERSPmTPCS_Position
Chro.50185OTHER0.9991790.0006560.000165
No Results

  • Fasta :-

    >Chro.50185 MISFIFKNKQFVKIVIIALLPCLNALFWLFFISNGWLAMYSMHFLCMFFIPTFFYGLQYL TSNLSDAREYGKNFDILKCICVCIFTSVFGTTCLFLVSELSKIIPTFDLLNIEEIKNGLL KEGIIKDPTNKIGFSTWFSSIYFSIVNPIIEELFWRSFVYKELIISLGVRNETNPQSRFN INEIGANYSDFLIARDHSSNLFESYDVESGQIGYKANTELASIICSVLYSLYHFFVLIRF SSIHCSILSTISLAIIGRALLYVNRKFHTIYSIYIHIGMDISIVIFLILSLK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/161 Sequence name : 161 Sequence length : 292 VALUES OF COMPUTED PARAMETERS Coef20 : 4.599 CoefTot : -0.698 ChDiff : 1 ZoneTo : 65 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.312 2.494 0.724 0.881 MesoH : 0.849 1.313 0.024 0.498 MuHd_075 : 24.526 17.486 7.581 6.215 MuHd_095 : 31.648 24.014 10.781 6.720 MuHd_100 : 30.008 23.570 10.755 6.213 MuHd_105 : 19.979 21.005 7.596 4.922 Hmax_075 : 14.467 20.100 5.415 5.836 Hmax_095 : 20.400 27.100 5.544 8.100 Hmax_100 : 19.300 26.800 6.088 7.190 Hmax_105 : 16.900 23.400 5.028 5.940 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4241 0.5759 DFMC : 0.4282 0.5718 This protein is probably imported in chloroplast. f(Ser) = 0.0769 f(Arg) = 0.0000 CMi = 1.09890 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 292 Chro.50185 MISFIFKNKQFVKIVIIALLPCLNALFWLFFISNGWLAMYSMHFLCMFFIPTFFYGLQYLTSNLSDAREYGKNFDILKCI 80 CVCIFTSVFGTTCLFLVSELSKIIPTFDLLNIEEIKNGLLKEGIIKDPTNKIGFSTWFSSIYFSIVNPIIEELFWRSFVY 160 KELIISLGVRNETNPQSRFNINEIGANYSDFLIARDHSSNLFESYDVESGQIGYKANTELASIICSVLYSLYHFFVLIRF 240 SSIHCSILSTISLAIIGRALLYVNRKFHTIYSIYIHIGMDISIVIFLILSLK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.50185 7 MISFIFK|NK 0.065 . Chro.50185 9 SFIFKNK|QF 0.067 . Chro.50185 13 KNKQFVK|IV 0.087 . Chro.50185 68 SNLSDAR|EY 0.111 . Chro.50185 72 DAREYGK|NF 0.060 . Chro.50185 78 KNFDILK|CI 0.070 . Chro.50185 102 LVSELSK|II 0.063 . Chro.50185 116 LNIEEIK|NG 0.058 . Chro.50185 121 IKNGLLK|EG 0.066 . Chro.50185 126 LKEGIIK|DP 0.067 . Chro.50185 131 IKDPTNK|IG 0.057 . Chro.50185 156 IEELFWR|SF 0.128 . Chro.50185 161 WRSFVYK|EL 0.103 . Chro.50185 170 IISLGVR|NE 0.079 . Chro.50185 178 ETNPQSR|FN 0.115 . Chro.50185 195 SDFLIAR|DH 0.124 . Chro.50185 215 SGQIGYK|AN 0.061 . Chro.50185 239 HFFVLIR|FS 0.092 . Chro.50185 258 SLAIIGR|AL 0.091 . Chro.50185 265 ALLYVNR|KF 0.085 . Chro.50185 266 LLYVNRK|FH 0.079 . Chro.50185 292 FLILSLK|-- 0.060 . ____________________________^_________________

  • Fasta :-

    >Chro.50185 ATGATTTCATTCATATTTAAAAATAAACAATTTGTTAAAATTGTTATTATTGCACTACTT CCTTGCCTAAATGCACTTTTTTGGTTGTTCTTCATTTCAAATGGCTGGCTTGCAATGTAT AGCATGCATTTTCTCTGCATGTTTTTTATCCCAACTTTTTTTTATGGCCTTCAATATCTT ACAAGCAATTTAAGCGATGCTCGAGAGTATGGAAAAAATTTTGATATACTCAAGTGCATA TGTGTTTGTATCTTTACATCAGTCTTTGGGACTACATGTCTTTTTTTAGTATCAGAGCTT TCAAAGATTATTCCAACATTTGATCTTTTAAATATTGAAGAAATCAAAAATGGGTTATTA AAAGAAGGTATAATTAAAGATCCAACAAACAAAATTGGTTTTTCTACGTGGTTTTCGAGC ATCTACTTTTCAATAGTTAATCCAATTATAGAAGAACTTTTTTGGAGGTCATTTGTTTAT AAAGAATTAATAATCTCATTAGGAGTTAGAAATGAAACCAACCCACAATCAAGGTTTAAC ATTAATGAGATCGGAGCAAATTATTCAGACTTTTTAATAGCAAGAGATCATAGCAGTAAC TTATTTGAAAGTTATGATGTTGAAAGTGGACAAATTGGCTACAAAGCAAATACTGAGCTT GCGAGCATTATTTGCTCAGTATTATATTCGCTTTATCATTTTTTTGTGTTAATACGCTTT TCCTCCATCCACTGTTCAATATTATCAACAATCTCCTTAGCAATTATAGGTCGGGCACTA CTTTATGTAAATAGAAAATTCCACACTATATACTCTATTTATATTCACATCGGGATGGAC ATTTCAATAGTAATATTCTTAATACTATCTCTAAAATAA
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  • Fasta :-

    MISFIFKNKQFVKIVIIALLPCLNALFWLFFISNGWLAMYSMHFLCMFFIPTFFYGLQYL TSNLSDAREYGKNFDILKCICVCIFTSVFGTTCLFLVSELSKIIPTFDLLNIEEIKNGLL KEGIIKDPTNKIGFSTWFSSIYFSIVNPIIEELFWRSFVYKELIISLGVRNETNPQSRFN INEIGANYSDFLIARDHSSNLFESYDVESGQIGYKANTELASIICSVLYSLYHFFVLIRF SSIHCSILSTISLAIIGRALLYVNRKFHTIYSIYIHIGMDISIVIFLILSLK

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Chro.50185      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India