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  • Fasta :-

    >Chro.50311 MNNFGNNTQKFVKNPVNKSANPNKMSSYHSFFDNSYTIQTNENKTQALTKSLKGEQKFNV SNIPPNIHSGANIISKSKNNENNSSSFFLGEIPSKKNNLETDIKQNMENEIIDLEEKKLL ENEKEDLEKIENDIKYWNALVDDEMADNLEIEPELPEEGVNLSKIGMRAKISNWKKPEKE KDRANKDSQKENIPEQESESKTTIKEGEKSKNNTQANPESQDIDEDEDIEPPPWRKLNRP LKYINDQILKWNWYYRMEQLYYDWQGYFFPNISYVNIYWIPYSFFYS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/459 Sequence name : 459 Sequence length : 287 VALUES OF COMPUTED PARAMETERS Coef20 : 3.426 CoefTot : -2.242 ChDiff : -11 ZoneTo : 32 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.824 0.559 -0.131 0.518 MesoH : -1.505 -0.809 -0.802 -0.006 MuHd_075 : 35.843 25.341 10.924 8.161 MuHd_095 : 49.521 32.115 15.680 10.051 MuHd_100 : 45.528 27.972 14.030 9.102 MuHd_105 : 34.983 18.261 11.568 6.530 Hmax_075 : 9.700 13.300 0.331 4.527 Hmax_095 : 17.000 13.600 1.898 5.310 Hmax_100 : 15.400 10.400 1.631 4.690 Hmax_105 : 2.500 0.200 -1.476 1.365 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0737 0.9263 DFMC : 0.1154 0.8846 This protein is probably imported in chloroplast. f(Ser) = 0.1250 f(Arg) = 0.0000 CMi = 1.78571 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 287 Chro.50311 MNNFGNNTQKFVKNPVNKSANPNKMSSYHSFFDNSYTIQTNENKTQALTKSLKGEQKFNVSNIPPNIHSGANIISKSKNN 80 ENNSSSFFLGEIPSKKNNLETDIKQNMENEIIDLEEKKLLENEKEDLEKIENDIKYWNALVDDEMADNLEIEPELPEEGV 160 NLSKIGMRAKISNWKKPEKEKDRANKDSQKENIPEQESESKTTIKEGEKSKNNTQANPESQDIDEDEDIEPPPWRKLNRP 240 LKYINDQILKWNWYYRMEQLYYDWQGYFFPNISYVNIYWIPYSFFYS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.50311 10 FGNNTQK|FV 0.083 . Chro.50311 13 NTQKFVK|NP 0.057 . Chro.50311 18 VKNPVNK|SA 0.125 . Chro.50311 24 KSANPNK|MS 0.073 . Chro.50311 44 IQTNENK|TQ 0.053 . Chro.50311 50 KTQALTK|SL 0.095 . Chro.50311 53 ALTKSLK|GE 0.060 . Chro.50311 57 SLKGEQK|FN 0.067 . Chro.50311 76 GANIISK|SK 0.093 . Chro.50311 78 NIISKSK|NN 0.061 . Chro.50311 95 LGEIPSK|KN 0.060 . Chro.50311 96 GEIPSKK|NN 0.076 . Chro.50311 104 NLETDIK|QN 0.060 . Chro.50311 117 IIDLEEK|KL 0.055 . Chro.50311 118 IDLEEKK|LL 0.092 . Chro.50311 124 KLLENEK|ED 0.057 . Chro.50311 129 EKEDLEK|IE 0.064 . Chro.50311 135 KIENDIK|YW 0.065 . Chro.50311 164 EGVNLSK|IG 0.057 . Chro.50311 168 LSKIGMR|AK 0.085 . Chro.50311 170 KIGMRAK|IS 0.070 . Chro.50311 175 AKISNWK|KP 0.063 . Chro.50311 176 KISNWKK|PE 0.113 . Chro.50311 179 NWKKPEK|EK 0.070 . Chro.50311 181 KKPEKEK|DR 0.071 . Chro.50311 183 PEKEKDR|AN 0.108 . Chro.50311 186 EKDRANK|DS 0.181 . Chro.50311 190 ANKDSQK|EN 0.074 . Chro.50311 201 EQESESK|TT 0.066 . Chro.50311 205 ESKTTIK|EG 0.070 . Chro.50311 209 TIKEGEK|SK 0.069 . Chro.50311 211 KEGEKSK|NN 0.073 . Chro.50311 235 IEPPPWR|KL 0.088 . Chro.50311 236 EPPPWRK|LN 0.070 . Chro.50311 239 PWRKLNR|PL 0.132 . Chro.50311 242 KLNRPLK|YI 0.236 . Chro.50311 250 INDQILK|WN 0.058 . Chro.50311 256 KWNWYYR|ME 0.097 . ____________________________^_________________
  • Fasta :-

    >Chro.50311 ATGAACAACTTTGGAAATAATACCCAAAAATTTGTCAAAAATCCTGTAAATAAGTCAGCA AACCCAAATAAAATGAGTTCTTATCATTCGTTTTTCGATAACTCATATACAATTCAAACT AATGAAAATAAGACCCAAGCTTTAACTAAATCTCTGAAAGGAGAGCAAAAATTCAATGTT TCAAATATTCCCCCAAATATTCATTCGGGTGCAAATATAATTTCAAAATCGAAAAATAAT GAGAATAATAGCTCATCATTTTTCTTAGGAGAAATTCCTTCAAAGAAAAATAATTTGGAA ACTGATATTAAACAAAATATGGAGAATGAAATAATTGACCTTGAAGAAAAAAAATTGTTA GAAAACGAAAAAGAAGATTTAGAAAAGATAGAAAATGACATAAAGTATTGGAATGCTCTA GTTGATGATGAAATGGCAGATAATTTGGAAATTGAACCAGAATTGCCGGAAGAAGGGGTA AATTTGTCTAAAATTGGGATGAGGGCAAAAATCTCTAATTGGAAAAAACCAGAAAAGGAA AAGGATAGGGCAAATAAAGATTCTCAAAAAGAAAATATTCCGGAGCAAGAATCAGAAAGT AAAACTACCATAAAAGAGGGCGAAAAATCAAAAAATAATACTCAAGCCAACCCTGAATCA CAAGATATTGATGAGGATGAAGATATTGAACCTCCTCCTTGGAGGAAATTGAATAGACCC TTAAAATACATTAATGACCAGATTTTAAAGTGGAACTGGTATTACAGAATGGAACAGCTT TATTACGATTGGCAAGGCTATTTTTTTCCCAACATTTCCTATGTCAACATTTACTGGATT CCCTATTCATTTTTCTACAGCTGA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.5031130 SSSYHSFFDN0.995unspChro.50311188 SANKDSQKEN0.997unsp

Chro.50311      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India