Chro.50424 | hypothetical protein

_IDPredictionOTHERSPmTPCS_Position
Chro.50424OTHER0.9999000.0000840.000016
No Results

  • Fasta :-

    >Chro.50424 MTFDFLDSGIEAINHYGIRNENLKNSGFLRLDFFGNDKDEEDFVERIYEETFQYAKIENP CKFVSEYNKGEIRKMMNRGTTTLGFIYQGGVILAVDSRASQGNYIASQEVKKIIQINDFL LGTMAGGAADCSYWERVLSKLCRLYELRNGERISVAGASKMITNIFFHYRAYDLSAGIMI AGFDKDGPHLYYVDNEGSRVKDCKFSVGSGSLYAYGVLDSGYRYDLTDEEAIDLGKRAIV IATNRDGGSGGLVRVYQINKSGVIKHVPGEDVSELHYAYSKKQGTDPTKM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/560 Sequence name : 560 Sequence length : 290 VALUES OF COMPUTED PARAMETERS Coef20 : 3.470 CoefTot : 0.000 ChDiff : -5 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.476 1.241 0.207 0.600 MesoH : -0.749 0.274 -0.369 0.173 MuHd_075 : 3.801 4.530 2.918 1.068 MuHd_095 : 34.580 19.545 9.846 6.078 MuHd_100 : 34.034 17.429 9.822 5.580 MuHd_105 : 31.686 15.806 9.068 5.061 Hmax_075 : 6.067 8.900 0.374 4.020 Hmax_095 : 16.887 14.000 2.944 5.819 Hmax_100 : 15.900 14.100 3.229 6.010 Hmax_105 : 15.167 16.217 3.227 6.813 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9084 0.0916 DFMC : 0.9278 0.0722
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 290 Chro.50424 MTFDFLDSGIEAINHYGIRNENLKNSGFLRLDFFGNDKDEEDFVERIYEETFQYAKIENPCKFVSEYNKGEIRKMMNRGT 80 TTLGFIYQGGVILAVDSRASQGNYIASQEVKKIIQINDFLLGTMAGGAADCSYWERVLSKLCRLYELRNGERISVAGASK 160 MITNIFFHYRAYDLSAGIMIAGFDKDGPHLYYVDNEGSRVKDCKFSVGSGSLYAYGVLDSGYRYDLTDEEAIDLGKRAIV 240 IATNRDGGSGGLVRVYQINKSGVIKHVPGEDVSELHYAYSKKQGTDPTKM 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.50424 19 INHYGIR|NE 0.085 . Chro.50424 24 IRNENLK|NS 0.072 . Chro.50424 30 KNSGFLR|LD 0.101 . Chro.50424 38 DFFGNDK|DE 0.062 . Chro.50424 46 EEDFVER|IY 0.084 . Chro.50424 56 ETFQYAK|IE 0.057 . Chro.50424 62 KIENPCK|FV 0.107 . Chro.50424 69 FVSEYNK|GE 0.068 . Chro.50424 73 YNKGEIR|KM 0.080 . Chro.50424 74 NKGEIRK|MM 0.105 . Chro.50424 78 IRKMMNR|GT 0.130 . Chro.50424 98 ILAVDSR|AS 0.089 . Chro.50424 111 IASQEVK|KI 0.087 . Chro.50424 112 ASQEVKK|II 0.111 . Chro.50424 136 DCSYWER|VL 0.096 . Chro.50424 140 WERVLSK|LC 0.062 . Chro.50424 143 VLSKLCR|LY 0.090 . Chro.50424 148 CRLYELR|NG 0.080 . Chro.50424 152 ELRNGER|IS 0.076 . Chro.50424 160 SVAGASK|MI 0.073 . Chro.50424 170 NIFFHYR|AY 0.107 . Chro.50424 185 MIAGFDK|DG 0.065 . Chro.50424 199 VDNEGSR|VK 0.077 . Chro.50424 201 NEGSRVK|DC 0.067 . Chro.50424 204 SRVKDCK|FS 0.084 . Chro.50424 223 VLDSGYR|YD 0.073 . Chro.50424 236 EAIDLGK|RA 0.061 . Chro.50424 237 AIDLGKR|AI 0.124 . Chro.50424 245 IVIATNR|DG 0.111 . Chro.50424 254 GSGGLVR|VY 0.080 . Chro.50424 260 RVYQINK|SG 0.062 . Chro.50424 265 NKSGVIK|HV 0.102 . Chro.50424 281 LHYAYSK|KQ 0.065 . Chro.50424 282 HYAYSKK|QG 0.118 . Chro.50424 289 QGTDPTK|M- 0.065 . ____________________________^_________________

  • Fasta :-

    >Chro.50424 ATGACTTTTGATTTTTTGGATTCAGGCATTGAAGCAATCAACCACTATGGAATAAGAAAT GAGAATTTGAAAAATTCAGGATTTTTAAGATTAGATTTTTTTGGAAATGATAAAGATGAA GAAGATTTTGTGGAAAGAATATATGAAGAAACTTTTCAATATGCAAAGATTGAAAATCCA TGTAAATTTGTAAGTGAATATAATAAAGGAGAGATCAGAAAGATGATGAATAGAGGTACT ACAACATTGGGATTCATTTATCAAGGAGGAGTAATATTAGCAGTTGATAGTAGAGCATCA CAAGGAAATTATATTGCAAGTCAAGAAGTGAAAAAGATTATTCAGATTAATGATTTCTTA TTAGGAACAATGGCAGGAGGTGCAGCAGATTGTTCATATTGGGAAAGAGTACTTTCAAAG TTATGTAGACTTTATGAACTTAGAAATGGAGAAAGAATTAGTGTAGCGGGAGCTTCGAAG ATGATCACCAATATATTCTTCCATTATAGAGCTTATGATCTTTCTGCAGGAATTATGATT GCAGGATTTGATAAAGATGGCCCTCATCTGTATTATGTAGATAATGAAGGATCTAGAGTA AAAGATTGTAAATTTTCTGTTGGATCGGGTTCTTTATATGCTTATGGTGTTTTAGACAGT GGGTATAGATATGATTTAACTGATGAAGAAGCTATTGATCTTGGAAAGAGAGCTATTGTA ATTGCAACAAACAGAGATGGTGGTTCAGGAGGTCTTGTTAGAGTTTATCAAATAAATAAA AGTGGTGTTATTAAGCATGTACCAGGAGAAGATGTCTCTGAACTTCATTATGCATACTCC AAAAAACAAGGTACTGATCCAACAAAGATGTAA
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  • Fasta :-

    MTFDFLDSGIEAINHYGIRNENLKNSGFLRLDFFGNDKDEEDFVERIYEETFQYAKIENP CKFVSEYNKGEIRKMMNRGTTTLGFIYQGGVILAVDSRASQGNYIASQEVKKIIQINDFL LGTMAGGAADCSYWERVLSKLCRLYELRNGERISVAGASKMITNIFFHYRAYDLSAGIMI AGFDKDGPHLYYVDNEGSRVKDCKFSVGSGSLYAYGVLDSGYRYDLTDEEAIDLGKRAIV IATNRDGGSGGLVRVYQINKSGVIKHVPGEDVSELHYAYSKKQGTDPTKM

    No Results
  • title: active site
  • coordinates: T80,D96,R98,K112,S209,D246,S249,G250
IDSitePositionGscoreIscore
Chro.50424T2880.5130.276
IDSitePositionGscoreIscore
Chro.50424T2880.5130.276
No Results

Chro.50424      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India