Chro.50454 | hydrolase, alpha/beta hydrolase fold family

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_IDPredictionOTHERSPmTPCS_Position
Chro.50454SP0.0129940.9868500.000156CS pos: 22-23. GSS-CV. Pr: 0.7305
No Results

  • Fasta :-

    >Chro.50454 MNLKYVITLICFITLCFYQGSSCVINSDFADLKAGRTFYTMTKKEQKKRIVMVHGLLAAS TQFDNWRCIFSHTGYQVLTYDLLGHGNTEWKLPGFFSQKRFVDQLNELLKHVGWVDSDNK AVEKISLLGVSMGGLIIINYALEHPDHISNLIPMCPPGIMTKYDFPKLYKLSNSSLVNAI KNIHNFKRMFRCGFYCASKLGYVKLGKQTKEEKKATTNVSHQMFSTYIKSGGDGSLFDRH LDFERLSEYENTFKIIFFWGMKDDLVPFAPALDFLVKHFNSTPIVVYPNIKHIPAYIMYS PALVTLDFLESNFTVGVPLGQVKELKYFYDNEVNIVTGLNFTISSEVIVKSNKENFTESY LDFMDY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/726 Sequence name : 726 Sequence length : 366 VALUES OF COMPUTED PARAMETERS Coef20 : 4.261 CoefTot : -0.398 ChDiff : 4 ZoneTo : 27 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.735 1.853 0.517 0.695 MesoH : -0.011 0.602 -0.304 0.374 MuHd_075 : 19.797 16.874 8.928 3.979 MuHd_095 : 16.839 17.209 4.658 5.547 MuHd_100 : 19.557 18.804 5.994 5.938 MuHd_105 : 16.543 19.783 5.439 5.494 Hmax_075 : 17.967 22.517 7.184 7.292 Hmax_095 : 14.700 20.212 6.514 6.912 Hmax_100 : 19.600 23.600 5.679 7.780 Hmax_105 : 18.462 28.350 5.875 7.061 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5935 0.4065 DFMC : 0.7765 0.2235
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 366 Chro.50454 MNLKYVITLICFITLCFYQGSSCVINSDFADLKAGRTFYTMTKKEQKKRIVMVHGLLAASTQFDNWRCIFSHTGYQVLTY 80 DLLGHGNTEWKLPGFFSQKRFVDQLNELLKHVGWVDSDNKAVEKISLLGVSMGGLIIINYALEHPDHISNLIPMCPPGIM 160 TKYDFPKLYKLSNSSLVNAIKNIHNFKRMFRCGFYCASKLGYVKLGKQTKEEKKATTNVSHQMFSTYIKSGGDGSLFDRH 240 LDFERLSEYENTFKIIFFWGMKDDLVPFAPALDFLVKHFNSTPIVVYPNIKHIPAYIMYSPALVTLDFLESNFTVGVPLG 320 QVKELKYFYDNEVNIVTGLNFTISSEVIVKSNKENFTESYLDFMDY 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .............................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.50454 4 ---MNLK|YV 0.075 . Chro.50454 33 SDFADLK|AG 0.063 . Chro.50454 36 ADLKAGR|TF 0.082 . Chro.50454 43 TFYTMTK|KE 0.060 . Chro.50454 44 FYTMTKK|EQ 0.083 . Chro.50454 47 MTKKEQK|KR 0.064 . Chro.50454 48 TKKEQKK|RI 0.109 . Chro.50454 49 KKEQKKR|IV 0.355 . Chro.50454 67 TQFDNWR|CI 0.103 . Chro.50454 91 HGNTEWK|LP 0.059 . Chro.50454 99 PGFFSQK|RF 0.062 . Chro.50454 100 GFFSQKR|FV 0.343 . Chro.50454 110 QLNELLK|HV 0.099 . Chro.50454 120 WVDSDNK|AV 0.068 . Chro.50454 124 DNKAVEK|IS 0.062 . Chro.50454 162 PPGIMTK|YD 0.072 . Chro.50454 167 TKYDFPK|LY 0.071 . Chro.50454 170 DFPKLYK|LS 0.057 . Chro.50454 181 SLVNAIK|NI 0.073 . Chro.50454 187 KNIHNFK|RM 0.066 . Chro.50454 188 NIHNFKR|MF 0.323 . Chro.50454 191 NFKRMFR|CG 0.173 . Chro.50454 199 GFYCASK|LG 0.059 . Chro.50454 204 SKLGYVK|LG 0.054 . Chro.50454 207 GYVKLGK|QT 0.063 . Chro.50454 210 KLGKQTK|EE 0.067 . Chro.50454 213 KQTKEEK|KA 0.070 . Chro.50454 214 QTKEEKK|AT 0.117 . Chro.50454 229 MFSTYIK|SG 0.097 . Chro.50454 239 DGSLFDR|HL 0.114 . Chro.50454 245 RHLDFER|LS 0.078 . Chro.50454 254 EYENTFK|II 0.061 . Chro.50454 262 IFFWGMK|DD 0.055 . Chro.50454 277 ALDFLVK|HF 0.060 . Chro.50454 291 VVYPNIK|HI 0.066 . Chro.50454 323 VPLGQVK|EL 0.060 . Chro.50454 326 GQVKELK|YF 0.082 . Chro.50454 350 SSEVIVK|SN 0.081 . Chro.50454 353 VIVKSNK|EN 0.062 . ____________________________^_________________

  • Fasta :-

    >Chro.50454 ATGAACTTAAAATACGTAATCACATTAATCTGTTTTATAACACTTTGCTTCTATCAAGGC TCTTCCTGTGTAATTAACTCTGATTTTGCAGATTTGAAAGCTGGAAGAACTTTTTATACT ATGACTAAAAAAGAACAAAAAAAAAGAATTGTAATGGTACATGGTTTGTTAGCAGCTTCA ACCCAATTTGATAATTGGAGGTGTATATTTTCCCATACTGGTTATCAAGTTTTAACCTAT GATTTATTAGGACATGGTAACACTGAATGGAAACTTCCTGGTTTTTTCTCACAAAAAAGA TTTGTTGATCAATTAAATGAATTGCTTAAACATGTTGGGTGGGTTGATAGTGATAATAAA GCTGTAGAGAAGATTTCATTATTAGGTGTTTCAATGGGAGGATTAATCATTATCAATTAT GCATTAGAACACCCAGATCATATTAGTAACTTAATACCAATGTGTCCACCTGGAATAATG ACAAAATATGATTTTCCAAAATTATACAAATTATCAAATTCTTCTCTTGTTAATGCCATT AAGAACATTCACAATTTTAAAAGAATGTTTAGATGTGGATTTTATTGTGCCTCCAAATTG GGATATGTTAAATTGGGGAAACAAACTAAAGAAGAAAAAAAAGCCACTACGAATGTTTCT CACCAAATGTTCTCAACATATATTAAATCAGGCGGAGATGGCAGCTTATTTGACAGACAT TTGGATTTTGAAAGATTATCCGAATATGAAAATACTTTTAAAATAATTTTCTTTTGGGGA ATGAAAGACGATTTAGTTCCTTTTGCTCCCGCATTGGACTTTCTAGTAAAGCATTTTAAC AGTACTCCTATAGTCGTTTACCCAAATATCAAACATATTCCTGCATATATAATGTATTCC CCAGCCTTAGTTACTTTGGATTTTTTGGAGTCAAACTTCACAGTAGGAGTTCCTTTGGGT CAAGTTAAAGAATTGAAATATTTTTATGATAATGAAGTAAATATTGTTACAGGATTAAAC TTTACTATTTCTAGTGAAGTAATTGTTAAATCTAACAAAGAAAATTTTACTGAATCATAT TTAGACTTTATGGATTATTGA
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  • Fasta :-

    MNLKYVITLICFITLCFYQGSSCVINSDFADLKAGRTFYTMTKKEQKKRIVMVHGLLAAS TQFDNWRCIFSHTGYQVLTYDLLGHGNTEWKLPGFFSQKRFVDQLNELLKHVGWVDSDNK AVEKISLLGVSMGGLIIINYALEHPDHISNLIPMCPPGIMTKYDFPKLYKLSNSSLVNAI KNIHNFKRMFRCGFYCASKLGYVKLGKQTKEEKKATTNVSHQMFSTYIKSGGDGSLFDRH LDFERLSEYENTFKIIFFWGMKDDLVPFAPALDFLVKHFNSTPIVVYPNIKHIPAYIMYS PALVTLDFLESNFTVGVPLGQVKELKYFYDNEVNIVTGLNFTISSEVIVKSNKENFTESY LDFMDY

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.50454247 SFERLSEYEN0.997unspChro.50454351 SVIVKSNKEN0.992unsp

Chro.50454      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India