Chro.60380 | Mov34/MPN/PAD-1 family proteasome regulatory subunit

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.60380OTHER0.9595820.0279190.012499
No Results

  • Fasta :-

    >Chro.60380 MSGFQSNIRSMLGNLHGFGGLMAQDPDAPIPDTSEQVYISSLALLKMLKHGRAGVPMEVM GLLLGEFIDDYSVRVVDVFSMPQSGNSVSVEAVDPVYQTDMLEMLKRVGRSELVVGWYHS HPGFGCWFSGTDVSTQQSFEQLNPRAVGIVVDPIQSVKGKVVIDCFRLISPHSVIAGQEP RQTTSNIGHLQKPSITALVHGLNRNYYSIAIRYRKNLLEQKMLLNLHKPTWSEPLRCEKE ENFNERTNSMIKRICETSKQYHESTKLGLSKTSEEFELENVGKIDAKKRLNADVETVLTD NILQILKSNIASSAF
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/544 Sequence name : 544 Sequence length : 315 VALUES OF COMPUTED PARAMETERS Coef20 : 3.431 CoefTot : -1.089 ChDiff : -2 ZoneTo : 24 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.088 1.306 0.025 0.540 MesoH : -0.468 0.418 -0.361 0.243 MuHd_075 : 18.950 13.629 3.768 4.878 MuHd_095 : 21.319 19.108 4.488 6.441 MuHd_100 : 23.207 22.120 5.392 6.572 MuHd_105 : 21.780 22.485 5.499 6.209 Hmax_075 : 17.500 14.233 2.890 6.183 Hmax_095 : 13.800 15.500 0.973 5.520 Hmax_100 : 20.200 21.500 3.076 7.280 Hmax_105 : 9.188 21.817 3.430 4.042 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6398 0.3602 DFMC : 0.7367 0.2633
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 315 Chro.60380 MSGFQSNIRSMLGNLHGFGGLMAQDPDAPIPDTSEQVYISSLALLKMLKHGRAGVPMEVMGLLLGEFIDDYSVRVVDVFS 80 MPQSGNSVSVEAVDPVYQTDMLEMLKRVGRSELVVGWYHSHPGFGCWFSGTDVSTQQSFEQLNPRAVGIVVDPIQSVKGK 160 VVIDCFRLISPHSVIAGQEPRQTTSNIGHLQKPSITALVHGLNRNYYSIAIRYRKNLLEQKMLLNLHKPTWSEPLRCEKE 240 ENFNERTNSMIKRICETSKQYHESTKLGLSKTSEEFELENVGKIDAKKRLNADVETVLTDNILQILKSNIASSAF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.60380 9 GFQSNIR|SM 0.125 . Chro.60380 46 SSLALLK|ML 0.068 . Chro.60380 49 ALLKMLK|HG 0.067 . Chro.60380 52 KMLKHGR|AG 0.102 . Chro.60380 74 IDDYSVR|VV 0.106 . Chro.60380 106 DMLEMLK|RV 0.070 . Chro.60380 107 MLEMLKR|VG 0.144 . Chro.60380 110 MLKRVGR|SE 0.404 . Chro.60380 145 FEQLNPR|AV 0.163 . Chro.60380 158 DPIQSVK|GK 0.061 . Chro.60380 160 IQSVKGK|VV 0.122 . Chro.60380 167 VVIDCFR|LI 0.081 . Chro.60380 181 IAGQEPR|QT 0.107 . Chro.60380 192 NIGHLQK|PS 0.075 . Chro.60380 204 LVHGLNR|NY 0.074 . Chro.60380 212 YYSIAIR|YR 0.094 . Chro.60380 214 SIAIRYR|KN 0.092 . Chro.60380 215 IAIRYRK|NL 0.185 . Chro.60380 221 KNLLEQK|ML 0.054 . Chro.60380 228 MLLNLHK|PT 0.064 . Chro.60380 236 TWSEPLR|CE 0.103 . Chro.60380 239 EPLRCEK|EE 0.101 . Chro.60380 246 EENFNER|TN 0.117 . Chro.60380 252 RTNSMIK|RI 0.062 . Chro.60380 253 TNSMIKR|IC 0.367 . Chro.60380 259 RICETSK|QY 0.071 . Chro.60380 266 QYHESTK|LG 0.060 . Chro.60380 271 TKLGLSK|TS 0.068 . Chro.60380 283 ELENVGK|ID 0.068 . Chro.60380 287 VGKIDAK|KR 0.059 . Chro.60380 288 GKIDAKK|RL 0.107 . Chro.60380 289 KIDAKKR|LN 0.255 . Chro.60380 307 NILQILK|SN 0.063 . ____________________________^_________________

  • Fasta :-

    >Chro.60380 ATGTCAGGGTTTCAATCAAATATACGTAGTATGTTGGGTAATTTGCATGGATTTGGAGGT TTAATGGCACAAGATCCAGATGCTCCGATACCAGATACATCAGAACAAGTATATATATCA TCATTGGCTTTATTAAAGATGTTGAAACATGGAAGAGCAGGTGTTCCAATGGAGGTAATG GGACTTTTGTTGGGAGAATTCATTGATGATTATTCAGTACGTGTAGTTGATGTATTTTCA ATGCCTCAATCAGGAAATAGTGTCAGCGTAGAAGCAGTAGATCCAGTTTATCAGACAGAT ATGTTAGAAATGTTAAAAAGAGTTGGAAGATCAGAGTTAGTTGTAGGATGGTATCACTCA CATCCAGGTTTTGGATGCTGGTTTTCAGGCACAGATGTAAGTACTCAGCAAAGTTTTGAG CAGTTAAATCCCAGAGCAGTGGGTATTGTTGTTGATCCTATTCAATCTGTGAAGGGGAAA GTTGTGATTGATTGCTTTAGATTAATTAGTCCTCACTCAGTAATTGCAGGTCAGGAGCCT AGACAGACAACTTCAAATATAGGGCATCTCCAAAAACCTTCAATAACAGCTCTAGTTCAT GGCCTTAATAGAAATTACTACTCTATTGCTATCAGATACAGAAAGAACCTTCTGGAACAG AAAATGCTTTTGAACCTCCACAAGCCTACATGGAGTGAGCCATTAAGATGTGAAAAAGAG GAGAATTTTAACGAAAGGACCAATTCAATGATCAAGAGGATTTGTGAAACTAGCAAGCAA TATCACGAATCTACCAAACTTGGATTATCAAAAACTTCGGAAGAATTCGAATTAGAAAAT GTTGGTAAGATCGATGCTAAGAAAAGGTTGAATGCTGATGTTGAAACAGTCTTAACTGAT AATATTCTCCAGATTCTTAAATCAAACATCGCTTCTTCCGCATTTTAG
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  • Fasta :-

    MSGFQSNIRSMLGNLHGFGGLMAQDPDAPIPDTSEQVYISSLALLKMLKHGRAGVPMEVM GLLLGEFIDDYSVRVVDVFSMPQSGNSVSVEAVDPVYQTDMLEMLKRVGRSELVVGWYHS HPGFGCWFSGTDVSTQQSFEQLNPRAVGIVVDPIQSVKGKVVIDCFRLISPHSVIAGQEP RQTTSNIGHLQKPSITALVHGLNRNYYSIAIRYRKNLLEQKMLLNLHKPTWSEPLRCEKE ENFNERTNSMIKRICETSKQYHESTKLGLSKTSEEFELENVGKIDAKKRLNADVETVLTD NILQILKSNIASSAF

  • title: MPN+ (JAMM) motif
  • coordinates: E58,H119,H121,S129,D132
No Results
No Results
No Results

Chro.60380      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India