Chro.60410 | endopeptidase

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_IDPredictionOTHERSPmTPCS_Position
Chro.60410SP0.2310520.6649830.103965CS pos: 25-26. LIG-VN. Pr: 0.6069
No Results

  • Fasta :-

    >Chro.60410 MGAPLAVGALVARMLSMLWSKPLIGVNHCVAHIEMGRLVTKVENPIVLYASGGNTQIIGY ANKRYKILGETLDIAIGNCIDRFARVMKLDNYPAAGYHIEQMAKKGKNLISLPYVVKGMD LSFSGILTFGEELIAEKQKEFNNDKQKLHSFYQDFCFSLQETLFAMLIEVTERAISLLNS DSILLVGGVGCN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/327 Sequence name : 327 Sequence length : 192 VALUES OF COMPUTED PARAMETERS Coef20 : 4.590 CoefTot : -0.307 ChDiff : 1 ZoneTo : 33 KR : 2 DE : 0 CleavSite : 23 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.212 1.582 0.207 0.544 MesoH : -0.340 0.507 -0.312 0.259 MuHd_075 : 22.004 14.197 7.297 5.157 MuHd_095 : 26.179 19.476 7.369 7.420 MuHd_100 : 24.610 16.780 8.141 6.741 MuHd_105 : 19.086 14.989 6.823 5.095 Hmax_075 : 15.225 18.700 4.043 6.770 Hmax_095 : 16.363 16.800 3.797 6.186 Hmax_100 : 14.500 15.900 3.618 5.950 Hmax_105 : 18.000 13.913 2.972 5.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4660 0.5340 DFMC : 0.4996 0.5004 This protein is probably imported in mitochondria. f(Ser) = 0.0606 f(Arg) = 0.0303 CMi = 0.53908 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 192 Chro.60410 MGAPLAVGALVARMLSMLWSKPLIGVNHCVAHIEMGRLVTKVENPIVLYASGGNTQIIGYANKRYKILGETLDIAIGNCI 80 DRFARVMKLDNYPAAGYHIEQMAKKGKNLISLPYVVKGMDLSFSGILTFGEELIAEKQKEFNNDKQKLHSFYQDFCFSLQ 160 ETLFAMLIEVTERAISLLNSDSILLVGGVGCN 240 ................................................................................ 80 ................................................................................ 160 ................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.60410 13 VGALVAR|ML 0.102 . Chro.60410 21 LSMLWSK|PL 0.072 . Chro.60410 37 AHIEMGR|LV 0.123 . Chro.60410 41 MGRLVTK|VE 0.064 . Chro.60410 63 IIGYANK|RY 0.061 . Chro.60410 64 IGYANKR|YK 0.183 . Chro.60410 66 YANKRYK|IL 0.090 . Chro.60410 82 IGNCIDR|FA 0.110 . Chro.60410 85 CIDRFAR|VM 0.131 . Chro.60410 88 RFARVMK|LD 0.111 . Chro.60410 104 HIEQMAK|KG 0.056 . Chro.60410 105 IEQMAKK|GK 0.087 . Chro.60410 107 QMAKKGK|NL 0.070 . Chro.60410 117 SLPYVVK|GM 0.068 . Chro.60410 137 EELIAEK|QK 0.056 . Chro.60410 139 LIAEKQK|EF 0.064 . Chro.60410 145 KEFNNDK|QK 0.060 . Chro.60410 147 FNNDKQK|LH 0.072 . Chro.60410 173 LIEVTER|AI 0.089 . ____________________________^_________________

  • Fasta :-

    >Chro.60410 ATGGGTGCACCTTTGGCAGTTGGAGCTCTAGTTGCAAGAATGTTGAGTATGCTTTGGTCA AAACCTTTAATCGGAGTAAATCATTGCGTTGCTCACATAGAAATGGGAAGACTCGTAACT AAAGTTGAAAATCCTATAGTACTATATGCATCAGGAGGAAACACTCAAATAATAGGTTAT GCCAACAAAAGATACAAAATTTTAGGTGAAACTTTGGATATTGCAATCGGGAACTGCATT GATAGATTTGCTAGAGTCATGAAACTTGACAATTATCCTGCAGCAGGATACCATATTGAA CAAATGGCAAAAAAAGGAAAGAATTTAATTTCACTTCCTTATGTTGTTAAAGGCATGGAT TTATCATTTTCCGGAATTCTAACTTTTGGAGAAGAATTAATAGCAGAAAAACAAAAAGAA TTTAATAATGATAAACAAAAATTACATTCTTTTTATCAAGATTTTTGCTTTTCTTTGCAA GAGACCCTTTTTGCAATGTTAATTGAAGTTACAGAAAGAGCAATCAGTCTATTAAACTCA GATTCAATCTTGCTAGTCGGAGGTGTTGGATGCAATTAA
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  • Fasta :-

    MGAPLAVGALVARMLSMLWSKPLIGVNHCVAHIEMGRLVTKVENPIVLYASGGNTQIIGY ANKRYKILGETLDIAIGNCIDRFARVMKLDNYPAAGYHIEQMAKKGKNLISLPYVVKGMD LSFSGILTFGEELIAEKQKEFNNDKQKLHSFYQDFCFSLQETLFAMLIEVTERAISLLNS DSILLVGGVGCN

    No Results
No Results
No Results
IDSitePeptideScoreMethod
Chro.60410176 SERAISLLNS0.993unsp

Chro.60410      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India