Chro.60413 | multi-pass transmembrane protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Chro.60413OTHER0.9994940.0001770.000329
No Results

  • Fasta :-

    >Chro.60413 MFNDSSPQGWYKNLPPITRSILTITFFSTLLITFGMLNPWYILFDWEYIFRKAQIWRFLT SFFFVGPFSIGWIMSQWMFTSFSSKLERSGSVGSSSGSYLYFILILMTGINIIGTAFDYP TGRKIGGSSLIFGIIYYWSKKFPTSLVSIWGFTLQAYQLPYALLFLDVLTGNSLIDDLIG LLAGHSYYYIRDIIYENNANNFLARTPKHFDKFVDYSSLLIKNYVYDFSSLNGHPNVINY PNSNVNRAGSSYNSFSGNSAQPRAFSGRGFRLGSD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/837 Sequence name : 837 Sequence length : 275 VALUES OF COMPUTED PARAMETERS Coef20 : 3.403 CoefTot : -1.419 ChDiff : 6 ZoneTo : 44 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.435 2.059 0.384 0.776 MesoH : 0.827 0.834 -0.053 0.460 MuHd_075 : 24.215 23.165 6.058 8.350 MuHd_095 : 40.363 24.379 10.140 8.664 MuHd_100 : 36.984 24.571 9.204 9.059 MuHd_105 : 31.211 23.275 8.793 8.459 Hmax_075 : 22.300 26.700 -0.614 8.800 Hmax_095 : 12.500 8.800 1.037 4.600 Hmax_100 : 12.500 15.000 1.037 6.180 Hmax_105 : 17.033 18.200 4.485 4.611 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3631 0.6369 DFMC : 0.5801 0.4199
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 275 Chro.60413 MFNDSSPQGWYKNLPPITRSILTITFFSTLLITFGMLNPWYILFDWEYIFRKAQIWRFLTSFFFVGPFSIGWIMSQWMFT 80 SFSSKLERSGSVGSSSGSYLYFILILMTGINIIGTAFDYPTGRKIGGSSLIFGIIYYWSKKFPTSLVSIWGFTLQAYQLP 160 YALLFLDVLTGNSLIDDLIGLLAGHSYYYIRDIIYENNANNFLARTPKHFDKFVDYSSLLIKNYVYDFSSLNGHPNVINY 240 PNSNVNRAGSSYNSFSGNSAQPRAFSGRGFRLGSD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.60413 12 SPQGWYK|NL 0.077 . Chro.60413 19 NLPPITR|SI 0.122 . Chro.60413 51 DWEYIFR|KA 0.085 . Chro.60413 52 WEYIFRK|AQ 0.083 . Chro.60413 57 RKAQIWR|FL 0.124 . Chro.60413 85 FTSFSSK|LE 0.065 . Chro.60413 88 FSSKLER|SG 0.175 . Chro.60413 123 FDYPTGR|KI 0.108 . Chro.60413 124 DYPTGRK|IG 0.069 . Chro.60413 140 IIYYWSK|KF 0.064 . Chro.60413 141 IYYWSKK|FP 0.092 . Chro.60413 191 HSYYYIR|DI 0.129 . Chro.60413 205 ANNFLAR|TP 0.101 . Chro.60413 208 FLARTPK|HF 0.197 . Chro.60413 212 TPKHFDK|FV 0.121 . Chro.60413 222 YSSLLIK|NY 0.062 . Chro.60413 247 PNSNVNR|AG 0.117 . Chro.60413 263 GNSAQPR|AF 0.166 . Chro.60413 268 PRAFSGR|GF 0.141 . Chro.60413 271 FSGRGFR|LG 0.246 . ____________________________^_________________

  • Fasta :-

    >Chro.60413 ATGTTCAATGATTCATCTCCGCAAGGTTGGTATAAGAACTTACCTCCAATCACGAGGAGT ATCCTCACAATAACATTTTTTTCAACTTTATTAATAACTTTTGGTATGTTGAATCCATGG TATATTCTCTTTGATTGGGAGTACATTTTTCGCAAGGCACAAATTTGGAGATTCCTCACA AGCTTCTTTTTTGTGGGTCCATTTAGTATTGGATGGATTATGAGCCAATGGATGTTTACA TCATTTTCGTCAAAATTAGAGAGGAGTGGGTCGGTTGGTTCCTCATCTGGGTCTTATTTG TATTTTATATTGATTTTAATGACAGGAATCAACATAATAGGTACTGCTTTTGATTACCCC ACAGGAAGAAAAATTGGAGGCTCTTCATTGATTTTCGGTATAATTTATTACTGGAGTAAG AAATTCCCAACTTCTTTGGTAAGTATTTGGGGATTCACTTTGCAAGCTTATCAGTTACCA TATGCATTGTTATTTTTGGATGTTTTGACTGGTAACTCTTTGATTGACGATTTGATTGGA TTATTAGCTGGACATTCTTATTACTATATTAGAGATATTATATATGAGAATAACGCAAAT AACTTCTTAGCCAGAACTCCAAAGCATTTTGACAAATTTGTTGACTATTCTTCTTTACTG ATTAAGAACTATGTCTATGACTTTTCATCTTTAAATGGCCATCCTAATGTAATTAACTAT CCAAATTCAAATGTAAATAGAGCCGGTTCTTCTTACAATTCATTTTCAGGAAACTCTGCT CAACCTAGAGCCTTTTCAGGAAGGGGATTTAGGCTGGGTTCAGATTAA
  • Download Fasta

  • Fasta :-

    MFNDSSPQGWYKNLPPITRSILTITFFSTLLITFGMLNPWYILFDWEYIFRKAQIWRFLT SFFFVGPFSIGWIMSQWMFTSFSSKLERSGSVGSSSGSYLYFILILMTGINIIGTAFDYP TGRKIGGSSLIFGIIYYWSKKFPTSLVSIWGFTLQAYQLPYALLFLDVLTGNSLIDDLIG LLAGHSYYYIRDIIYENNANNFLARTPKHFDKFVDYSSLLIKNYVYDFSSLNGHPNVINY PNSNVNRAGSSYNSFSGNSAQPRAFSGRGFRLGSD

    No Results
No Results
No Results
IDSitePeptideScoreMethod
Chro.60413250 SNRAGSSYNS0.992unsp

Chro.60413      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India