Chro.60498 | 26S proteasome ATPase subunit

_IDPredictionOTHERSPmTPCS_Position
Chro.60498OTHER0.9998250.0001100.000065
No Results

  • Fasta :-

    >Chro.60498 MAVKPQIKTEKDGGKEEEDQSRPLDQVDIDIMRKYGMGPYVSKIKQVETEVKDLMSAISK LNSIRESDTGLAPPSQWDLAADRQNMQMEQPLQVARCTKIIDAGTEEAKYMINIKQMAKY VVGLGDKVAPTDIEEGMRVGVDRTKYKIQIPLPPKIDPSVAMMTVEDKPDVTYNDIGGAK EQLERLREVVEMPLLHPERFVQLGIDPPKGVLLYGPPGTGKTLTARAVANRTDACFICVI GSELVQKYVGEGARMVRELFKLARSKKACILFIDEVDAIGGARGDESAHGDHEVQRTMLE IVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFRIHAKV MSMERDIRFELLSRLCPNCTGADIRSVCTEAGMFAIRARRKSISEKDLLDAINKVVKGYK KFSATAKYMVYN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/512 Sequence name : 512 Sequence length : 432 VALUES OF COMPUTED PARAMETERS Coef20 : 2.304 CoefTot : -0.493 ChDiff : 2 ZoneTo : 9 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.406 1.247 0.094 0.444 MesoH : -0.901 0.331 -0.374 0.157 MuHd_075 : 7.174 7.117 2.219 1.749 MuHd_095 : 21.451 8.274 6.210 4.492 MuHd_100 : 22.587 9.801 7.399 4.916 MuHd_105 : 21.318 11.071 7.596 4.754 Hmax_075 : -13.533 -0.800 -5.622 0.460 Hmax_095 : -11.812 -3.413 -5.814 0.464 Hmax_100 : -10.400 -2.600 -4.686 1.130 Hmax_105 : -6.883 1.050 -3.351 2.310 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9963 0.0037 DFMC : 0.9951 0.0049
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 432 Chro.60498 MAVKPQIKTEKDGGKEEEDQSRPLDQVDIDIMRKYGMGPYVSKIKQVETEVKDLMSAISKLNSIRESDTGLAPPSQWDLA 80 ADRQNMQMEQPLQVARCTKIIDAGTEEAKYMINIKQMAKYVVGLGDKVAPTDIEEGMRVGVDRTKYKIQIPLPPKIDPSV 160 AMMTVEDKPDVTYNDIGGAKEQLERLREVVEMPLLHPERFVQLGIDPPKGVLLYGPPGTGKTLTARAVANRTDACFICVI 240 GSELVQKYVGEGARMVRELFKLARSKKACILFIDEVDAIGGARGDESAHGDHEVQRTMLEIVNQLDGFDARGNIKVLMAT 320 NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFRIHAKVMSMERDIRFELLSRLCPNCTGADIRSVCTEAGMFAIRARR 400 KSISEKDLLDAINKVVKGYKKFSATAKYMVYN 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................P.............................................................. 400 ................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ Chro.60498 4 ---MAVK|PQ 0.062 . Chro.60498 8 AVKPQIK|TE 0.066 . Chro.60498 11 PQIKTEK|DG 0.097 . Chro.60498 15 TEKDGGK|EE 0.066 . Chro.60498 22 EEEDQSR|PL 0.109 . Chro.60498 33 VDIDIMR|KY 0.094 . Chro.60498 34 DIDIMRK|YG 0.067 . Chro.60498 43 MGPYVSK|IK 0.062 . Chro.60498 45 PYVSKIK|QV 0.090 . Chro.60498 52 QVETEVK|DL 0.074 . Chro.60498 60 LMSAISK|LN 0.070 . Chro.60498 65 SKLNSIR|ES 0.124 . Chro.60498 83 WDLAADR|QN 0.091 . Chro.60498 96 QPLQVAR|CT 0.115 . Chro.60498 99 QVARCTK|II 0.209 . Chro.60498 109 AGTEEAK|YM 0.067 . Chro.60498 115 KYMINIK|QM 0.065 . Chro.60498 119 NIKQMAK|YV 0.079 . Chro.60498 127 VVGLGDK|VA 0.055 . Chro.60498 138 DIEEGMR|VG 0.064 . Chro.60498 143 MRVGVDR|TK 0.126 . Chro.60498 145 VGVDRTK|YK 0.066 . Chro.60498 147 VDRTKYK|IQ 0.070 . Chro.60498 155 QIPLPPK|ID 0.059 . Chro.60498 168 MMTVEDK|PD 0.059 . Chro.60498 180 NDIGGAK|EQ 0.058 . Chro.60498 185 AKEQLER|LR 0.086 . Chro.60498 187 EQLERLR|EV 0.088 . Chro.60498 199 PLLHPER|FV 0.129 . Chro.60498 209 LGIDPPK|GV 0.077 . Chro.60498 221 GPPGTGK|TL 0.062 . Chro.60498 226 GKTLTAR|AV 0.113 . Chro.60498 231 ARAVANR|TD 0.087 . Chro.60498 247 GSELVQK|YV 0.154 . Chro.60498 254 YVGEGAR|MV 0.123 . Chro.60498 257 EGARMVR|EL 0.245 . Chro.60498 261 MVRELFK|LA 0.069 . Chro.60498 264 ELFKLAR|SK 0.130 . Chro.60498 266 FKLARSK|KA 0.068 . Chro.60498 267 KLARSKK|AC 0.343 . Chro.60498 283 DAIGGAR|GD 0.097 . Chro.60498 296 GDHEVQR|TM 0.110 . Chro.60498 311 LDGFDAR|GN 0.144 . Chro.60498 315 DARGNIK|VL 0.059 . Chro.60498 322 VLMATNR|PD 0.076 . Chro.60498 332 LDPALLR|PG 0.069 . Chro.60498 335 ALLRPGR|LD 0.253 . Chro.60498 338 RPGRLDR|KV 0.591 *ProP* Chro.60498 339 PGRLDRK|VE 0.066 . Chro.60498 350 LPDLEGR|TQ 0.077 . Chro.60498 355 GRTQIFR|IH 0.096 . Chro.60498 359 IFRIHAK|VM 0.075 . Chro.60498 365 KVMSMER|DI 0.107 . Chro.60498 368 SMERDIR|FE 0.165 . Chro.60498 374 RFELLSR|LC 0.063 . Chro.60498 385 CTGADIR|SV 0.255 . Chro.60498 397 AGMFAIR|AR 0.088 . Chro.60498 399 MFAIRAR|RK 0.147 . Chro.60498 400 FAIRARR|KS 0.309 . Chro.60498 401 AIRARRK|SI 0.150 . Chro.60498 406 RKSISEK|DL 0.114 . Chro.60498 414 LLDAINK|VV 0.062 . Chro.60498 417 AINKVVK|GY 0.070 . Chro.60498 420 KVVKGYK|KF 0.065 . Chro.60498 421 VVKGYKK|FS 0.103 . Chro.60498 427 KFSATAK|YM 0.076 . ____________________________^_________________

  • Fasta :-

    >Chro.60498 ATGGCAGTGAAGCCGCAGATTAAAACAGAAAAAGATGGAGGAAAAGAAGAGGAAGACCAG TCTCGTCCTCTTGATCAAGTTGATATAGATATAATGAGAAAGTATGGAATGGGGCCATAT GTGTCGAAGATTAAACAGGTGGAAACCGAGGTCAAAGATTTAATGTCAGCTATTTCAAAG CTGAATAGTATAAGAGAGTCAGATACAGGTTTGGCTCCTCCATCTCAATGGGATCTGGCA GCTGATAGACAAAATATGCAAATGGAACAGCCCTTACAGGTCGCAAGATGCACAAAAATT ATAGATGCTGGTACAGAGGAAGCAAAATATATGATCAACATTAAACAAATGGCCAAGTAT GTAGTTGGACTAGGAGATAAAGTTGCTCCAACTGATATAGAAGAAGGAATGAGAGTAGGT GTTGATCGTACCAAGTATAAGATTCAGATACCTTTACCACCAAAAATAGACCCTTCAGTT GCAATGATGACTGTAGAAGATAAACCTGATGTTACTTATAATGACATTGGAGGAGCAAAA GAGCAGTTGGAACGTCTAAGAGAAGTTGTAGAAATGCCTTTATTACATCCTGAGAGATTC GTACAATTAGGTATTGACCCGCCAAAAGGAGTATTATTGTATGGTCCTCCTGGTACTGGA AAGACTCTAACAGCAAGAGCCGTAGCAAATAGAACGGATGCATGTTTCATATGTGTTATT GGCTCTGAGTTGGTACAGAAATATGTTGGAGAAGGAGCAAGAATGGTTAGAGAACTTTTT AAATTAGCTAGAAGTAAGAAAGCATGTATATTATTTATAGATGAAGTAGATGCAATAGGA GGAGCAAGAGGAGATGAAAGTGCTCATGGAGATCATGAGGTTCAAAGAACTATGCTTGAA ATTGTGAATCAACTCGATGGATTTGATGCAAGAGGTAACATCAAGGTCCTTATGGCAACT AACAGACCAGATACTTTGGATCCTGCTCTTCTTAGACCAGGAAGATTAGATAGAAAAGTT GAGTTCGGACTTCCAGATTTGGAAGGAAGGACCCAGATTTTTAGAATCCACGCTAAAGTA ATGAGTATGGAAAGAGATATCAGATTTGAGCTCCTTTCTAGGCTTTGTCCAAACTGTACA GGTGCCGATATAAGATCAGTCTGTACTGAAGCTGGAATGTTTGCAATTAGAGCAAGAAGG AAAAGCATCAGTGAAAAAGATCTTTTGGATGCCATTAACAAAGTTGTTAAAGGTTACAAG AAGTTCTCTGCAACAGCAAAGTATATGGTTTACAATTAA
  • Download Fasta

  • Fasta :-

    MAVKPQIKTEKDGGKEEEDQSRPLDQVDIDIMRKYGMGPYVSKIKQVETEVKDLMSAISK LNSIRESDTGLAPPSQWDLAADRQNMQMEQPLQVARCTKIIDAGTEEAKYMINIKQMAKY VVGLGDKVAPTDIEEGMRVGVDRTKYKIQIPLPPKIDPSVAMMTVEDKPDVTYNDIGGAK EQLERLREVVEMPLLHPERFVQLGIDPPKGVLLYGPPGTGKTLTARAVANRTDACFICVI GSELVQKYVGEGARMVRELFKLARSKKACILFIDEVDAIGGARGDESAHGDHEVQRTMLE IVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFRIHAKV MSMERDIRFELLSRLCPNCTGADIRSVCTEAGMFAIRARRKSISEKDLLDAINKVVKGYK KFSATAKYMVYN

  • title: ATP binding site
  • coordinates: P216,P217,G218,T219,G220,K221,T222,L223,D274,N321
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.60498404 SRKSISEKDL0.998unspChro.60498404 SRKSISEKDL0.998unspChro.60498404 SRKSISEKDL0.998unspChro.6049863 SSKLNSIRES0.997unspChro.60498402 SARRKSISEK0.998unsp

Chro.60498      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India