Chro.70291 | hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
Chro.70291OTHER0.9992130.0003940.000393
No Results

  • Fasta :-

    >Chro.70291 MSNENSSLYPKQFSICTSDGVKLSCRSFGNIPSKVPITEIESIVFVLVHPYGIMGGSSSN MLGLALSLADKGYGSIIFDHRGIGKSTGYKSIFGNNEVYDVVSVCNDIKGKNSGIKVVLI GSSAGAPIAGSAVDECENVIGYIGIGYVFGFWPSLLFKQHYNNILRSKKHKLFIMGDSDG FTSIDVLKNKMDK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/580 Sequence name : 580 Sequence length : 193 VALUES OF COMPUTED PARAMETERS Coef20 : 3.560 CoefTot : -1.508 ChDiff : 3 ZoneTo : 38 KR : 4 DE : 2 CleavSite : 36 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.788 1.612 0.322 0.770 MesoH : -0.006 0.523 -0.189 0.331 MuHd_075 : 20.189 9.572 6.408 4.986 MuHd_095 : 46.027 23.673 13.001 9.508 MuHd_100 : 43.251 25.630 12.100 9.108 MuHd_105 : 34.757 23.522 9.136 7.001 Hmax_075 : 3.800 6.767 6.561 2.847 Hmax_095 : 12.425 12.900 3.265 5.220 Hmax_100 : 14.400 15.800 4.076 5.220 Hmax_105 : 13.800 20.300 5.282 6.078 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9057 0.0943 DFMC : 0.9388 0.0612
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 193 Chro.70291 MSNENSSLYPKQFSICTSDGVKLSCRSFGNIPSKVPITEIESIVFVLVHPYGIMGGSSSNMLGLALSLADKGYGSIIFDH 80 RGIGKSTGYKSIFGNNEVYDVVSVCNDIKGKNSGIKVVLIGSSAGAPIAGSAVDECENVIGYIGIGYVFGFWPSLLFKQH 160 YNNILRSKKHKLFIMGDSDGFTSIDVLKNKMDK 240 ................................................................................ 80 ................................................................................ 160 ................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.70291 11 NSSLYPK|QF 0.076 . Chro.70291 22 CTSDGVK|LS 0.061 . Chro.70291 26 GVKLSCR|SF 0.164 . Chro.70291 34 FGNIPSK|VP 0.069 . Chro.70291 71 ALSLADK|GY 0.086 . Chro.70291 81 SIIFDHR|GI 0.142 . Chro.70291 85 DHRGIGK|ST 0.089 . Chro.70291 90 GKSTGYK|SI 0.102 . Chro.70291 109 SVCNDIK|GK 0.068 . Chro.70291 111 CNDIKGK|NS 0.072 . Chro.70291 116 GKNSGIK|VV 0.077 . Chro.70291 158 WPSLLFK|QH 0.067 . Chro.70291 166 HYNNILR|SK 0.142 . Chro.70291 168 NNILRSK|KH 0.058 . Chro.70291 169 NILRSKK|HK 0.234 . Chro.70291 171 LRSKKHK|LF 0.096 . Chro.70291 188 TSIDVLK|NK 0.071 . Chro.70291 190 IDVLKNK|MD 0.066 . Chro.70291 193 LKNKMDK|-- 0.073 . ____________________________^_________________

  • Fasta :-

    >Chro.70291 ATGTCTAATGAAAACTCAAGCTTATATCCGAAGCAATTTTCAATTTGTACGAGCGATGGA GTAAAATTAAGTTGCAGAAGCTTTGGTAATATTCCATCAAAAGTTCCGATAACTGAGATC GAAAGTATAGTTTTTGTGCTAGTTCATCCATATGGGATAATGGGTGGTAGTAGTTCTAAT ATGCTTGGCTTAGCTTTGAGTTTGGCAGATAAGGGATATGGTAGCATTATTTTTGATCAT AGGGGAATTGGTAAATCAACGGGATATAAGTCAATTTTTGGAAATAACGAAGTTTATGAT GTAGTCTCTGTATGTAATGATATAAAAGGAAAGAATAGTGGTATTAAGGTTGTTTTAATT GGGTCTTCTGCAGGTGCCCCAATTGCTGGTTCAGCTGTTGATGAATGTGAAAATGTTATA GGATATATCGGAATAGGATACGTATTTGGGTTTTGGCCATCCTTGTTATTTAAACAACAT TACAACAATATTCTTAGATCGAAGAAACACAAATTATTTATTATGGGAGATTCCGATGGA TTCACTTCCATTGATGTTCTAAAAAATAAAATGGACAAGTAA
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  • Fasta :-

    MSNENSSLYPKQFSICTSDGVKLSCRSFGNIPSKVPITEIESIVFVLVHPYGIMGGSSSN MLGLALSLADKGYGSIIFDHRGIGKSTGYKSIFGNNEVYDVVSVCNDIKGKNSGIKVVLI GSSAGAPIAGSAVDECENVIGYIGIGYVFGFWPSLLFKQHYNNILRSKKHKLFIMGDSDG FTSIDVLKNKMDK

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Chro.70291      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India