Chro.70546 | ubiquitin carboxyl-terminal hydrolase

_IDPredictionOTHERSPmTPCS_Position
Chro.70546OTHER0.9961560.0033770.000467
No Results

  • Fasta :-

    >Chro.70546 MTERARLGDSAKNEFEIISRLYQLQSILLVTSSNGFKNEDKGGEAYNYYEVEFNENGWRT KLINSYMNLNEKDKGIRNIGNTCYLNSTIQCLALSYYFIEWLHEYMRNEFSKPNKLILYL FEFLTCILEPIKQDGKYNIVARICSNNNAKSVDLRFVKEISNKFSFGKQHDASEFLRYLL TNIDDNCSPFTMLTEDYVKCLSCGVIESKKNHSLSIIDLYVFNNSLSHSDNRENLNLSND YIITLDSLIKNHFLSENIPDSLDCDHCQQKSASERWNSIVNPSKYVILALHNYFWDQKSN KGIKQNEIKITFNELFMLNNHKYIIYALIFHKGKTTNSGHYYTIGRKHFYDNSREKNPSW FKYDDNIISYIESFYQIQKSSENPFLIFALLADK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/204 Sequence name : 204 Sequence length : 394 VALUES OF COMPUTED PARAMETERS Coef20 : 4.141 CoefTot : 0.000 ChDiff : -2 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.900 1.535 0.167 0.573 MesoH : -0.990 0.085 -0.472 0.142 MuHd_075 : 17.114 7.925 3.480 1.970 MuHd_095 : 10.941 9.700 3.844 2.792 MuHd_100 : 20.911 15.707 5.873 4.601 MuHd_105 : 32.449 21.307 8.480 6.617 Hmax_075 : -1.633 3.500 -2.066 1.360 Hmax_095 : -4.600 5.100 -2.715 2.660 Hmax_100 : 3.300 9.900 -0.165 2.940 Hmax_105 : -4.287 8.500 -2.223 1.925 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9575 0.0425 DFMC : 0.9595 0.0405
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 394 Chro.70546 MTERARLGDSAKNEFEIISRLYQLQSILLVTSSNGFKNEDKGGEAYNYYEVEFNENGWRTKLINSYMNLNEKDKGIRNIG 80 NTCYLNSTIQCLALSYYFIEWLHEYMRNEFSKPNKLILYLFEFLTCILEPIKQDGKYNIVARICSNNNAKSVDLRFVKEI 160 SNKFSFGKQHDASEFLRYLLTNIDDNCSPFTMLTEDYVKCLSCGVIESKKNHSLSIIDLYVFNNSLSHSDNRENLNLSND 240 YIITLDSLIKNHFLSENIPDSLDCDHCQQKSASERWNSIVNPSKYVILALHNYFWDQKSNKGIKQNEIKITFNELFMLNN 320 HKYIIYALIFHKGKTTNSGHYYTIGRKHFYDNSREKNPSWFKYDDNIISYIESFYQIQKSSENPFLIFALLADK 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Chro.70546 4 ---MTER|AR 0.063 . Chro.70546 6 -MTERAR|LG 0.079 . Chro.70546 12 RLGDSAK|NE 0.069 . Chro.70546 20 EFEIISR|LY 0.063 . Chro.70546 37 TSSNGFK|NE 0.086 . Chro.70546 41 GFKNEDK|GG 0.068 . Chro.70546 59 FNENGWR|TK 0.066 . Chro.70546 61 ENGWRTK|LI 0.067 . Chro.70546 72 YMNLNEK|DK 0.071 . Chro.70546 74 NLNEKDK|GI 0.092 . Chro.70546 77 EKDKGIR|NI 0.080 . Chro.70546 107 WLHEYMR|NE 0.081 . Chro.70546 112 MRNEFSK|PN 0.085 . Chro.70546 115 EFSKPNK|LI 0.067 . Chro.70546 132 CILEPIK|QD 0.060 . Chro.70546 136 PIKQDGK|YN 0.062 . Chro.70546 142 KYNIVAR|IC 0.111 . Chro.70546 150 CSNNNAK|SV 0.123 . Chro.70546 155 AKSVDLR|FV 0.184 . Chro.70546 158 VDLRFVK|EI 0.131 . Chro.70546 163 VKEISNK|FS 0.079 . Chro.70546 168 NKFSFGK|QH 0.080 . Chro.70546 177 DASEFLR|YL 0.118 . Chro.70546 199 LTEDYVK|CL 0.064 . Chro.70546 209 CGVIESK|KN 0.057 . Chro.70546 210 GVIESKK|NH 0.086 . Chro.70546 232 LSHSDNR|EN 0.075 . Chro.70546 250 TLDSLIK|NH 0.061 . Chro.70546 270 CDHCQQK|SA 0.115 . Chro.70546 275 QKSASER|WN 0.166 . Chro.70546 284 SIVNPSK|YV 0.094 . Chro.70546 298 NYFWDQK|SN 0.071 . Chro.70546 301 WDQKSNK|GI 0.089 . Chro.70546 304 KSNKGIK|QN 0.079 . Chro.70546 309 IKQNEIK|IT 0.085 . Chro.70546 322 FMLNNHK|YI 0.068 . Chro.70546 332 YALIFHK|GK 0.064 . Chro.70546 334 LIFHKGK|TT 0.069 . Chro.70546 346 HYYTIGR|KH 0.071 . Chro.70546 347 YYTIGRK|HF 0.065 . Chro.70546 354 HFYDNSR|EK 0.081 . Chro.70546 356 YDNSREK|NP 0.062 . Chro.70546 362 KNPSWFK|YD 0.067 . Chro.70546 379 SFYQIQK|SS 0.073 . Chro.70546 394 FALLADK|-- 0.055 . ____________________________^_________________

  • Fasta :-

    >Chro.70546 ATGACAGAAAGAGCGAGATTAGGTGATTCTGCGAAGAATGAGTTTGAAATAATTTCAAGA TTATACCAGTTACAAAGTATACTACTGGTGACATCTAGTAATGGCTTTAAAAATGAAGAT AAAGGCGGTGAGGCTTATAATTATTACGAGGTGGAGTTCAATGAAAATGGTTGGAGGACT AAGCTAATTAATTCTTATATGAATTTAAATGAAAAAGATAAAGGTATACGAAATATTGGA AATACTTGCTATTTAAATTCAACAATTCAATGCTTGGCGTTGAGTTACTATTTTATTGAA TGGCTTCATGAATATATGAGAAACGAATTCTCTAAACCAAATAAATTAATTTTGTATCTT TTCGAATTTTTAACTTGTATATTAGAGCCAATCAAACAAGATGGAAAATATAACATAGTT GCAAGGATTTGCAGTAACAATAATGCTAAGTCTGTAGATTTAAGATTTGTTAAAGAAATA TCCAATAAATTCAGTTTTGGGAAACAACATGATGCTTCTGAGTTTTTAAGATATTTATTA ACAAATATTGATGATAATTGCTCACCTTTCACAATGTTAACAGAAGATTATGTTAAATGT TTATCTTGCGGAGTGATTGAGTCAAAGAAAAATCATTCATTATCTATTATTGATTTATAT GTTTTTAACAACTCTTTATCTCATTCAGATAACAGAGAAAATCTTAACTTAAGTAATGAT TATATAATAACTCTGGATTCTCTGATTAAAAATCACTTCTTATCTGAAAATATTCCAGAT TCTCTTGACTGTGACCATTGTCAACAGAAAAGTGCCTCCGAAAGATGGAATTCAATAGTT AATCCCTCCAAGTATGTTATTTTGGCATTACATAACTACTTTTGGGACCAAAAATCAAAT AAAGGCATAAAACAAAACGAGATAAAAATAACCTTTAATGAACTATTTATGCTTAATAAC CACAAATACATTATTTACGCACTCATCTTTCACAAAGGAAAGACCACCAATTCGGGACAT TATTATACTATAGGAAGAAAACATTTCTACGATAATTCCAGAGAAAAAAACCCAAGTTGG TTTAAATACGATGATAATATTATCTCATATATTGAATCATTCTACCAAATTCAGAAATCT AGTGAAAATCCTTTCCTAATTTTTGCCTTACTTGCAGATAAATAA
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  • Fasta :-

    MTERARLGDSAKNEFEIISRLYQLQSILLVTSSNGFKNEDKGGEAYNYYEVEFNENGWRT KLINSYMNLNEKDKGIRNIGNTCYLNSTIQCLALSYYFIEWLHEYMRNEFSKPNKLILYL FEFLTCILEPIKQDGKYNIVARICSNNNAKSVDLRFVKEISNKFSFGKQHDASEFLRYLL TNIDDNCSPFTMLTEDYVKCLSCGVIESKKNHSLSIIDLYVFNNSLSHSDNRENLNLSND YIITLDSLIKNHFLSENIPDSLDCDHCQQKSASERWNSIVNPSKYVILALHNYFWDQKSN KGIKQNEIKITFNELFMLNNHKYIIYALIFHKGKTTNSGHYYTIGRKHFYDNSREKNPSW FKYDDNIISYIESFYQIQKSSENPFLIFALLADK

  • title: Active Site
  • coordinates: N78,C83,H340,D365
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
Chro.70546215 SNHSLSIIDL0.995unspChro.70546227 SNNSLSHSDN0.996unsp

Chro.70546      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India