EDI_004700 | proteasome subunit alpha type-7, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_004700OTHER0.9998690.0000630.000068
No Results

  • Fasta :-

    >EDI_004700 MSYDRAITVFSPNGHLFQVEYALEAVSKGLVSVGVKGKDCIIFGVEKKSIAKLQDPRTVR KIQQIDQHIYTTFAGLTADARVLINKARLEAQNYRMSMEDAPTVEYVTKAVANYQQKYTQ QGGSRPFGISTLIGGFDPDGTPRLYQTDPAGTWTEWKAHVVGRNSKTVDEYLVKGYEDNM EIDKAVVVVVRALLEVVESKNNIDVAVFTSDYKLTMLNDTKLAEIVQQIERDKQAEAEEK KPILQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_004700.fa Sequence name : EDI_004700 Sequence length : 245 VALUES OF COMPUTED PARAMETERS Coef20 : 3.684 CoefTot : -0.804 ChDiff : -2 ZoneTo : 19 KR : 1 DE : 1 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.276 1.541 -0.005 0.449 MesoH : -1.121 0.134 -0.534 0.108 MuHd_075 : 26.535 14.664 6.289 4.673 MuHd_095 : 14.047 8.752 3.120 2.893 MuHd_100 : 18.730 13.569 5.364 4.882 MuHd_105 : 22.329 17.870 6.443 6.340 Hmax_075 : 13.650 10.150 1.599 4.130 Hmax_095 : 7.787 5.162 -0.059 3.614 Hmax_100 : 10.200 11.100 0.358 4.380 Hmax_105 : 8.900 10.600 0.091 4.700 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9903 0.0097 DFMC : 0.9910 0.0090
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 245 EDI_004700 MSYDRAITVFSPNGHLFQVEYALEAVSKGLVSVGVKGKDCIIFGVEKKSIAKLQDPRTVRKIQQIDQHIYTTFAGLTADA 80 RVLINKARLEAQNYRMSMEDAPTVEYVTKAVANYQQKYTQQGGSRPFGISTLIGGFDPDGTPRLYQTDPAGTWTEWKAHV 160 VGRNSKTVDEYLVKGYEDNMEIDKAVVVVVRALLEVVESKNNIDVAVFTSDYKLTMLNDTKLAEIVQQIERDKQAEAEEK 240 KPILQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_004700 5 --MSYDR|AI 0.081 . EDI_004700 28 ALEAVSK|GL 0.071 . EDI_004700 36 LVSVGVK|GK 0.079 . EDI_004700 38 SVGVKGK|DC 0.081 . EDI_004700 47 IIFGVEK|KS 0.064 . EDI_004700 48 IFGVEKK|SI 0.179 . EDI_004700 52 EKKSIAK|LQ 0.059 . EDI_004700 57 AKLQDPR|TV 0.114 . EDI_004700 60 QDPRTVR|KI 0.260 . EDI_004700 61 DPRTVRK|IQ 0.089 . EDI_004700 81 GLTADAR|VL 0.078 . EDI_004700 86 ARVLINK|AR 0.063 . EDI_004700 88 VLINKAR|LE 0.100 . EDI_004700 95 LEAQNYR|MS 0.096 . EDI_004700 109 TVEYVTK|AV 0.087 . EDI_004700 117 VANYQQK|YT 0.091 . EDI_004700 125 TQQGGSR|PF 0.104 . EDI_004700 143 DPDGTPR|LY 0.082 . EDI_004700 157 GTWTEWK|AH 0.066 . EDI_004700 163 KAHVVGR|NS 0.142 . EDI_004700 166 VVGRNSK|TV 0.190 . EDI_004700 174 VDEYLVK|GY 0.067 . EDI_004700 184 DNMEIDK|AV 0.072 . EDI_004700 191 AVVVVVR|AL 0.095 . EDI_004700 200 LEVVESK|NN 0.065 . EDI_004700 213 VFTSDYK|LT 0.053 . EDI_004700 221 TMLNDTK|LA 0.074 . EDI_004700 231 IVQQIER|DK 0.091 . EDI_004700 233 QQIERDK|QA 0.084 . EDI_004700 240 QAEAEEK|KP 0.058 . EDI_004700 241 AEAEEKK|PI 0.106 . ____________________________^_________________

  • Fasta :-

    >EDI_004700 ATGTCATACGATAGAGCTATTACTGTATTTTCACCAAATGGTCATTTATTCCAAGTAGAA TACGCACTCGAAGCTGTGAGTAAAGGACTAGTTTCAGTTGGTGTTAAAGGAAAAGATTGT ATTATTTTTGGTGTTGAAAAGAAATCAATTGCCAAATTACAAGACCCAAGAACAGTAAGA AAAATTCAACAAATTGATCAACACATTTATACTACATTTGCTGGATTAACTGCAGACGCT CGAGTATTAATTAATAAAGCAAGACTTGAAGCACAAAATTATCGTATGTCAATGGAAGAT GCTCCAACTGTTGAATATGTTACAAAAGCAGTTGCCAACTATCAACAAAAATATACTCAA CAAGGTGGAAGTCGTCCATTTGGTATTTCTACTCTTATCGGAGGATTTGATCCTGATGGA ACTCCAAGACTATATCAAACTGACCCAGCTGGAACATGGACAGAATGGAAAGCTCATGTT GTTGGAAGAAATTCAAAAACTGTTGATGAATATTTAGTAAAAGGGTATGAAGATAATATG GAAATAGACAAAGCAGTTGTGGTTGTTGTTCGAGCTCTTTTAGAAGTTGTTGAAAGTAAA AATAATATTGATGTTGCTGTTTTTACAAGTGATTATAAATTAACAATGTTAAATGATACT AAATTAGCAGAAATTGTTCAACAAATAGAAAGAGATAAACAAGCTGAAGCAGAAGAAAAG AAGCCAATTCTTCAATAA
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  • Fasta :-

    MSYDRAITVFSPNGHLFQVEYALEAVSKGLVSVGVKGKDCIIFGVEKKSIAKLQDPRTVR KIQQIDQHIYTTFAGLTADARVLINKARLEAQNYRMSMEDAPTVEYVTKAVANYQQKYTQ QGGSRPFGISTLIGGFDPDGTPRLYQTDPAGTWTEWKAHVVGRNSKTVDEYLVKGYEDNM EIDKAVVVVVRALLEVVESKNNIDVAVFTSDYKLTMLNDTKLAEIVQQIERDKQAEAEEK KPILQ

  • title: active site
  • coordinates: L30,E46,K48,K61,R163
No Results
No Results
IDSitePeptideScoreMethod
EDI_00470097 SNYRMSMEDA0.998unsp

EDI_004700      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India