EDI_014170 | hypothetical protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
EDI_014170OTHER0.9563560.0007340.042910
No Results

  • Fasta :-

    >EDI_014170 MLPPQQKKKKSFTSFVNACSYNLSSHLYNSVVKSQFKPFPFNLKYVLQGVTYTEQPTSNN NIAKHLSTMFRVTYRNGFTYHLPHCSLTTDAGWGCTLRSIQMLFLNSLIRLQEPNPGFGE DAAEKVQKNFIIHSMEERREYVQLIEDTPKQEAVLSLYKMFNLKIVRQNNQKGTNYLSPS TCAIALSQLVEIWDQRPCHVIYSNTFPKEIQPNTLLMISAPLNEKTINCLDNTFVGGVVC GVDTKAIYVCGRTGNMLLLLDPHFVQKAHEDGDFDIIDYSVKPNDLRMVRLTELVFGNCI WGILVREDNIEMLKTWCKTSLGVTNEEEIREMVSVGNEEGFEVLDF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_014170.fa Sequence name : EDI_014170 Sequence length : 346 VALUES OF COMPUTED PARAMETERS Coef20 : 3.825 CoefTot : -4.189 ChDiff : -3 ZoneTo : 112 KR : 12 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.871 1.441 0.211 0.505 MesoH : -0.383 0.396 -0.282 0.227 MuHd_075 : 36.408 20.078 10.455 8.330 MuHd_095 : 43.603 26.543 11.450 10.149 MuHd_100 : 46.429 25.163 11.867 10.626 MuHd_105 : 39.765 24.333 9.823 8.992 Hmax_075 : 14.700 12.700 0.804 5.050 Hmax_095 : 14.500 16.900 1.979 5.030 Hmax_100 : 16.800 13.700 2.501 5.390 Hmax_105 : 11.000 20.300 0.443 4.130 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6442 0.3558 DFMC : 0.4230 0.5770 This protein is probably imported in mitochondria. f(Ser) = 0.1071 f(Arg) = 0.0357 CMi = 0.89286 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 346 EDI_014170 MLPPQQKKKKSFTSFVNACSYNLSSHLYNSVVKSQFKPFPFNLKYVLQGVTYTEQPTSNNNIAKHLSTMFRVTYRNGFTY 80 HLPHCSLTTDAGWGCTLRSIQMLFLNSLIRLQEPNPGFGEDAAEKVQKNFIIHSMEERREYVQLIEDTPKQEAVLSLYKM 160 FNLKIVRQNNQKGTNYLSPSTCAIALSQLVEIWDQRPCHVIYSNTFPKEIQPNTLLMISAPLNEKTINCLDNTFVGGVVC 240 GVDTKAIYVCGRTGNMLLLLDPHFVQKAHEDGDFDIIDYSVKPNDLRMVRLTELVFGNCIWGILVREDNIEMLKTWCKTS 320 LGVTNEEEIREMVSVGNEEGFEVLDF 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .......................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_014170 7 MLPPQQK|KK 0.056 . EDI_014170 8 LPPQQKK|KK 0.086 . EDI_014170 9 PPQQKKK|KS 0.150 . EDI_014170 10 PQQKKKK|SF 0.192 . EDI_014170 33 LYNSVVK|SQ 0.080 . EDI_014170 37 VVKSQFK|PF 0.060 . EDI_014170 44 PFPFNLK|YV 0.077 . EDI_014170 64 SNNNIAK|HL 0.115 . EDI_014170 71 HLSTMFR|VT 0.132 . EDI_014170 75 MFRVTYR|NG 0.087 . EDI_014170 98 GWGCTLR|SI 0.125 . EDI_014170 110 FLNSLIR|LQ 0.084 . EDI_014170 125 GEDAAEK|VQ 0.055 . EDI_014170 128 AAEKVQK|NF 0.069 . EDI_014170 138 IHSMEER|RE 0.089 . EDI_014170 139 HSMEERR|EY 0.149 . EDI_014170 150 LIEDTPK|QE 0.057 . EDI_014170 159 AVLSLYK|MF 0.054 . EDI_014170 164 YKMFNLK|IV 0.074 . EDI_014170 167 FNLKIVR|QN 0.087 . EDI_014170 172 VRQNNQK|GT 0.071 . EDI_014170 196 VEIWDQR|PC 0.082 . EDI_014170 208 YSNTFPK|EI 0.081 . EDI_014170 225 SAPLNEK|TI 0.058 . EDI_014170 245 VCGVDTK|AI 0.071 . EDI_014170 252 AIYVCGR|TG 0.077 . EDI_014170 267 DPHFVQK|AH 0.094 . EDI_014170 282 IIDYSVK|PN 0.059 . EDI_014170 287 VKPNDLR|MV 0.098 . EDI_014170 290 NDLRMVR|LT 0.181 . EDI_014170 306 IWGILVR|ED 0.077 . EDI_014170 314 DNIEMLK|TW 0.056 . EDI_014170 318 MLKTWCK|TS 0.064 . EDI_014170 330 TNEEEIR|EM 0.081 . ____________________________^_________________

  • Fasta :-

    >EDI_014170 ATGCTTCCGCCTCAACAAAAGAAAAAAAAGTCATTTACTAGTTTTGTTAATGCGTGCTCG TATAACCTTTCTTCTCATTTATATAACTCTGTTGTTAAATCTCAATTTAAACCATTTCCA TTTAATTTAAAATACGTATTACAAGGAGTTACTTACACTGAGCAACCCACATCAAATAAC AATATTGCTAAACACCTTTCAACCATGTTTAGAGTCACTTATAGAAATGGGTTTACCTAC CATTTACCTCATTGTAGTTTGACAACAGATGCTGGATGGGGATGTACATTAAGATCTATT CAAATGTTATTTCTTAATTCACTAATAAGACTACAAGAACCAAACCCAGGTTTTGGAGAA GATGCTGCAGAAAAAGTTCAAAAAAATTTTATTATTCATTCAATGGAAGAACGAAGAGAA TATGTCCAATTAATTGAGGACACTCCAAAACAAGAAGCTGTTTTAAGTCTCTACAAAATG TTCAATTTAAAGATAGTAAGACAAAATAACCAAAAAGGAACAAATTACCTTTCTCCTTCT ACATGTGCAATAGCTTTATCTCAACTTGTAGAGATATGGGATCAACGACCTTGTCATGTT ATTTATAGTAATACTTTCCCTAAAGAAATTCAACCAAACACTCTTCTAATGATTAGTGCA CCTTTAAATGAAAAAACAATTAATTGTCTTGATAACACTTTTGTAGGAGGTGTGGTGTGT GGTGTTGATACAAAGGCTATTTATGTTTGTGGAAGAACAGGAAATATGTTACTTCTACTT GACCCTCATTTTGTTCAAAAAGCACACGAAGATGGAGATTTTGATATTATTGATTATTCT GTAAAACCAAACGACTTAAGAATGGTTCGTCTAACAGAATTGGTTTTTGGTAATTGTATA TGGGGAATATTGGTCAGAGAAGATAATATAGAAATGCTAAAAACTTGGTGTAAAACTTCT CTTGGAGTGACCAATGAAGAAGAGATACGTGAGATGGTTTCTGTAGGTAATGAAGAAGGC TTTGAAGTGTTAGATTTTTAA
  • Download Fasta

  • Fasta :-

    MLPPQQKKKKSFTSFVNACSYNLSSHLYNSVVKSQFKPFPFNLKYVLQGVTYTEQPTSNN NIAKHLSTMFRVTYRNGFTYHLPHCSLTTDAGWGCTLRSIQMLFLNSLIRLQEPNPGFGE DAAEKVQKNFIIHSMEERREYVQLIEDTPKQEAVLSLYKMFNLKIVRQNNQKGTNYLSPS TCAIALSQLVEIWDQRPCHVIYSNTFPKEIQPNTLLMISAPLNEKTINCLDNTFVGGVVC GVDTKAIYVCGRTGNMLLLLDPHFVQKAHEDGDFDIIDYSVKPNDLRMVRLTELVFGNCI WGILVREDNIEMLKTWCKTSLGVTNEEEIREMVSVGNEEGFEVLDF

    No Results
No Results
No Results
No Results

EDI_014170      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India