EDI_028230 | 26S proteasome non-ATPase regulatory subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
EDI_028230OTHER0.9855520.0008630.013585
No Results

  • Fasta :-

    >EDI_028230 MFSFGGRRPISGDMPLPDTSETVHISSLALLKMLKHGRAGVPVEVMGLMLGEYVDDYTVR VVDVFAMPQNGTGVSVEAVDEVYQTTMIEMLRQTGRKESIVGWYHSHPGFGCWLSSIDIS TQQSFEKLNERCVAVVVDPIQSVKGKVVIDAFRTIQNQFNLGVEPRQVTSNQGHLTKPTS QAKVRGLGKQYYSMPIEFSKNEIDERMLLNLQKKKWTDSLEVESSQRKDSNIQTIDKLIG LMKQYNQNIQDEALDPKLRDLQQVGKIDPKKHLQRIADQALTENAVDTLGVFMNTVVF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_028230.fa Sequence name : EDI_028230 Sequence length : 298 VALUES OF COMPUTED PARAMETERS Coef20 : 3.474 CoefTot : -0.509 ChDiff : -2 ZoneTo : 12 KR : 2 DE : 0 CleavSite : 18 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.935 1.329 -0.107 0.467 MesoH : -0.577 0.385 -0.387 0.227 MuHd_075 : 39.059 18.185 8.978 7.341 MuHd_095 : 14.370 6.463 2.846 4.752 MuHd_100 : 17.397 7.596 4.208 4.918 MuHd_105 : 14.378 6.410 4.209 4.055 Hmax_075 : 13.650 6.883 1.297 4.620 Hmax_095 : 2.275 1.600 -1.182 3.098 Hmax_100 : 2.500 4.000 -1.024 3.520 Hmax_105 : 10.850 4.800 1.259 4.503 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8691 0.1309 DFMC : 0.8184 0.1816
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 298 EDI_028230 MFSFGGRRPISGDMPLPDTSETVHISSLALLKMLKHGRAGVPVEVMGLMLGEYVDDYTVRVVDVFAMPQNGTGVSVEAVD 80 EVYQTTMIEMLRQTGRKESIVGWYHSHPGFGCWLSSIDISTQQSFEKLNERCVAVVVDPIQSVKGKVVIDAFRTIQNQFN 160 LGVEPRQVTSNQGHLTKPTSQAKVRGLGKQYYSMPIEFSKNEIDERMLLNLQKKKWTDSLEVESSQRKDSNIQTIDKLIG 240 LMKQYNQNIQDEALDPKLRDLQQVGKIDPKKHLQRIADQALTENAVDTLGVFMNTVVF 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_028230 7 MFSFGGR|RP 0.082 . EDI_028230 8 FSFGGRR|PI 0.131 . EDI_028230 32 SSLALLK|ML 0.073 . EDI_028230 35 ALLKMLK|HG 0.063 . EDI_028230 38 KMLKHGR|AG 0.110 . EDI_028230 60 VDDYTVR|VV 0.098 . EDI_028230 92 TMIEMLR|QT 0.123 . EDI_028230 96 MLRQTGR|KE 0.119 . EDI_028230 97 LRQTGRK|ES 0.096 . EDI_028230 127 TQQSFEK|LN 0.073 . EDI_028230 131 FEKLNER|CV 0.099 . EDI_028230 144 DPIQSVK|GK 0.062 . EDI_028230 146 IQSVKGK|VV 0.153 . EDI_028230 153 VVIDAFR|TI 0.083 . EDI_028230 166 NLGVEPR|QV 0.177 . EDI_028230 177 NQGHLTK|PT 0.079 . EDI_028230 183 KPTSQAK|VR 0.066 . EDI_028230 185 TSQAKVR|GL 0.241 . EDI_028230 189 KVRGLGK|QY 0.064 . EDI_028230 200 MPIEFSK|NE 0.068 . EDI_028230 206 KNEIDER|ML 0.079 . EDI_028230 213 MLLNLQK|KK 0.058 . EDI_028230 214 LLNLQKK|KW 0.148 . EDI_028230 215 LNLQKKK|WT 0.121 . EDI_028230 227 EVESSQR|KD 0.082 . EDI_028230 228 VESSQRK|DS 0.121 . EDI_028230 237 NIQTIDK|LI 0.062 . EDI_028230 243 KLIGLMK|QY 0.074 . EDI_028230 257 DEALDPK|LR 0.060 . EDI_028230 259 ALDPKLR|DL 0.126 . EDI_028230 266 DLQQVGK|ID 0.061 . EDI_028230 270 VGKIDPK|KH 0.057 . EDI_028230 271 GKIDPKK|HL 0.142 . EDI_028230 275 PKKHLQR|IA 0.167 . ____________________________^_________________

  • Fasta :-

    >EDI_028230 ATGTTCTCTTTTGGTGGAAGAAGACCAATTTCTGGAGATATGCCTCTCCCTGATACAAGT GAAACTGTTCACATCTCTTCTCTTGCTTTATTAAAAATGTTAAAACATGGAAGGGCTGGT GTCCCTGTTGAAGTTATGGGGTTGATGCTTGGAGAATATGTTGACGATTACACTGTTCGT GTGGTTGATGTATTTGCTATGCCACAAAATGGTACAGGAGTTTCTGTTGAAGCAGTTGAT GAAGTGTATCAAACAACAATGATCGAAATGTTAAGACAAACAGGAAGAAAAGAATCAATT GTTGGGTGGTATCACAGTCACCCTGGATTTGGATGTTGGTTATCTTCTATAGATATTTCT ACACAACAATCATTTGAAAAATTAAATGAAAGGTGTGTCGCTGTTGTTGTAGATCCAATT CAATCAGTTAAAGGAAAAGTTGTCATTGATGCATTTAGAACTATTCAGAATCAATTCAAC TTAGGAGTTGAACCAAGACAAGTTACTTCAAACCAAGGTCATTTAACTAAACCAACTTCA CAAGCCAAAGTCCGAGGTTTAGGAAAACAATATTATTCTATGCCAATTGAATTCTCAAAG AACGAAATAGATGAAAGAATGTTATTGAATTTACAAAAGAAAAAATGGACAGATTCATTA GAAGTTGAATCCTCACAACGTAAAGATTCAAACATTCAAACTATTGATAAATTGATTGGA TTAATGAAACAATATAACCAAAATATACAAGATGAAGCCTTAGATCCAAAACTAAGAGAT TTACAACAAGTAGGTAAAATTGATCCTAAAAAACATTTACAAAGAATTGCTGACCAAGCC TTAACAGAAAATGCCGTAGATACACTTGGAGTATTCATGAATACTGTTGTTTTCTAA
  • Download Fasta

  • Fasta :-

    MFSFGGRRPISGDMPLPDTSETVHISSLALLKMLKHGRAGVPVEVMGLMLGEYVDDYTVR VVDVFAMPQNGTGVSVEAVDEVYQTTMIEMLRQTGRKESIVGWYHSHPGFGCWLSSIDIS TQQSFEKLNERCVAVVVDPIQSVKGKVVIDAFRTIQNQFNLGVEPRQVTSNQGHLTKPTS QAKVRGLGKQYYSMPIEFSKNEIDERMLLNLQKKKWTDSLEVESSQRKDSNIQTIDKLIG LMKQYNQNIQDEALDPKLRDLQQVGKIDPKKHLQRIADQALTENAVDTLGVFMNTVVF

  • title: MPN+ (JAMM) motif
  • coordinates: E44,H105,H107,S115,D118
No Results
No Results
IDSitePeptideScoreMethod
EDI_028230230 SQRKDSNIQT0.993unsp

EDI_028230      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India