EDI_038430 | pre-mRNA-splicing factor SAD1, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_038430OTHER0.9994860.0004910.000023
No Results

  • Fasta :-

    >EDI_038430 MKRTTQNSNECQSKRAYCPYVETVDRNLIDFDKEKVCCKTLKTNQIYCCMICGKYYQGRD VGSPAYVHSLEENHHIFLSLNTKQFFNLPHGNEVIEPSFKDIINALDPVYTSNDISHLDD ENKVIQLKDHFNKKYIIGFIGFNNLGRTDSINCLVQSIGHCKEIRNLLLSYEEIEKISSK ARCGELIKRVSMLIRKQWNPTLIKSVISPYELMSELNRLKKSFSIEKQEDLIEFYMFFIN ALLPLTQSFQGQIQIEEGKKKYIKHCICIPLDLPPMPLYPDQMKEKIIPQLLLKDILKKY DGKTETLIGKRSVKYLIKKLPKYLTFVIKRFERNTFQGDKNITVVEFEDTLDMSDYVVND SIKQQTNYHLVSAIKHDGGIEDGTYSSFLYHQSLKKWFEINNEEVKEAFFPLIKVSAICL LIYEQDE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_038430.fa Sequence name : EDI_038430 Sequence length : 427 VALUES OF COMPUTED PARAMETERS Coef20 : 3.855 CoefTot : -0.289 ChDiff : 2 ZoneTo : 9 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.129 1.747 0.135 0.617 MesoH : -1.019 0.098 -0.520 0.171 MuHd_075 : 3.101 2.186 1.474 0.568 MuHd_095 : 34.759 11.773 7.363 5.637 MuHd_100 : 26.159 12.259 7.588 3.401 MuHd_105 : 18.913 11.796 7.441 2.117 Hmax_075 : -10.033 -8.283 -3.464 -1.899 Hmax_095 : -0.262 -3.300 -2.556 -0.455 Hmax_100 : -7.200 -2.600 -1.017 -2.100 Hmax_105 : -4.400 -2.000 -1.438 -0.850 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9115 0.0885 DFMC : 0.9159 0.0841
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 427 EDI_038430 MKRTTQNSNECQSKRAYCPYVETVDRNLIDFDKEKVCCKTLKTNQIYCCMICGKYYQGRDVGSPAYVHSLEENHHIFLSL 80 NTKQFFNLPHGNEVIEPSFKDIINALDPVYTSNDISHLDDENKVIQLKDHFNKKYIIGFIGFNNLGRTDSINCLVQSIGH 160 CKEIRNLLLSYEEIEKISSKARCGELIKRVSMLIRKQWNPTLIKSVISPYELMSELNRLKKSFSIEKQEDLIEFYMFFIN 240 ALLPLTQSFQGQIQIEEGKKKYIKHCICIPLDLPPMPLYPDQMKEKIIPQLLLKDILKKYDGKTETLIGKRSVKYLIKKL 320 PKYLTFVIKRFERNTFQGDKNITVVEFEDTLDMSDYVVNDSIKQQTNYHLVSAIKHDGGIEDGTYSSFLYHQSLKKWFEI 400 NNEEVKEAFFPLIKVSAICLLIYEQDE 480 ................................................................................ 80 ................................................................................ 160 ............................................................P................... 240 ................................................................................ 320 ................................................................................ 400 ........................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ EDI_038430 2 -----MK|RT 0.066 . EDI_038430 3 ----MKR|TT 0.171 . EDI_038430 14 SNECQSK|RA 0.064 . EDI_038430 15 NECQSKR|AY 0.259 . EDI_038430 26 YVETVDR|NL 0.081 . EDI_038430 33 NLIDFDK|EK 0.056 . EDI_038430 35 IDFDKEK|VC 0.069 . EDI_038430 39 KEKVCCK|TL 0.065 . EDI_038430 42 VCCKTLK|TN 0.065 . EDI_038430 54 CCMICGK|YY 0.066 . EDI_038430 59 GKYYQGR|DV 0.217 . EDI_038430 83 FLSLNTK|QF 0.068 . EDI_038430 100 VIEPSFK|DI 0.082 . EDI_038430 123 HLDDENK|VI 0.059 . EDI_038430 128 NKVIQLK|DH 0.066 . EDI_038430 133 LKDHFNK|KY 0.075 . EDI_038430 134 KDHFNKK|YI 0.143 . EDI_038430 147 GFNNLGR|TD 0.089 . EDI_038430 162 QSIGHCK|EI 0.071 . EDI_038430 165 GHCKEIR|NL 0.079 . EDI_038430 176 SYEEIEK|IS 0.064 . EDI_038430 180 IEKISSK|AR 0.065 . EDI_038430 182 KISSKAR|CG 0.129 . EDI_038430 188 RCGELIK|RV 0.068 . EDI_038430 189 CGELIKR|VS 0.127 . EDI_038430 195 RVSMLIR|KQ 0.084 . EDI_038430 196 VSMLIRK|QW 0.080 . EDI_038430 204 WNPTLIK|SV 0.077 . EDI_038430 218 LMSELNR|LK 0.070 . EDI_038430 220 SELNRLK|KS 0.066 . EDI_038430 221 ELNRLKK|SF 0.509 *ProP* EDI_038430 227 KSFSIEK|QE 0.066 . EDI_038430 259 IQIEEGK|KK 0.059 . EDI_038430 260 QIEEGKK|KY 0.078 . EDI_038430 261 IEEGKKK|YI 0.168 . EDI_038430 264 GKKKYIK|HC 0.068 . EDI_038430 284 LYPDQMK|EK 0.058 . EDI_038430 286 PDQMKEK|II 0.071 . EDI_038430 294 IPQLLLK|DI 0.076 . EDI_038430 298 LLKDILK|KY 0.066 . EDI_038430 299 LKDILKK|YD 0.137 . EDI_038430 303 LKKYDGK|TE 0.061 . EDI_038430 310 TETLIGK|RS 0.056 . EDI_038430 311 ETLIGKR|SV 0.227 . EDI_038430 314 IGKRSVK|YL 0.192 . EDI_038430 318 SVKYLIK|KL 0.064 . EDI_038430 319 VKYLIKK|LP 0.073 . EDI_038430 322 LIKKLPK|YL 0.072 . EDI_038430 329 YLTFVIK|RF 0.068 . EDI_038430 330 LTFVIKR|FE 0.155 . EDI_038430 333 VIKRFER|NT 0.319 . EDI_038430 340 NTFQGDK|NI 0.065 . EDI_038430 363 VVNDSIK|QQ 0.060 . EDI_038430 375 HLVSAIK|HD 0.083 . EDI_038430 395 LYHQSLK|KW 0.068 . EDI_038430 396 YHQSLKK|WF 0.097 . EDI_038430 406 INNEEVK|EA 0.065 . EDI_038430 414 AFFPLIK|VS 0.054 . ____________________________^_________________

  • Fasta :-

    >EDI_038430 ATGAAAAGAACAACTCAAAATTCTAATGAATGTCAAAGTAAAAGGGCATACTGTCCATAT GTAGAAACTGTTGACAGAAACCTTATTGATTTTGACAAAGAAAAGGTATGTTGTAAAACC TTAAAGACAAATCAAATATACTGTTGCATGATTTGTGGAAAGTATTACCAAGGAAGAGAT GTTGGGTCTCCTGCTTATGTCCATAGTTTAGAAGAAAATCATCATATCTTTCTTTCTTTA AATACAAAACAGTTTTTTAATTTACCACATGGAAATGAAGTAATTGAACCATCATTTAAA GATATCATTAATGCATTAGATCCTGTATATACTTCAAATGATATATCTCATCTTGATGAT GAAAACAAAGTAATTCAATTAAAAGATCATTTTAATAAGAAGTATATTATTGGATTTATT GGATTTAATAACTTAGGAAGAACTGATTCTATCAATTGTTTAGTTCAAAGTATTGGACAT TGTAAAGAAATAAGAAATTTATTACTTAGTTATGAAGAAATAGAAAAAATATCATCCAAA GCAAGATGTGGAGAGTTAATTAAACGAGTTAGTATGTTAATAAGAAAACAATGGAATCCA ACATTAATTAAATCAGTAATTTCACCATATGAATTAATGAGTGAACTTAATCGATTAAAG AAAAGTTTTAGTATAGAAAAACAAGAAGATTTAATAGAGTTTTATATGTTTTTCATCAAT GCATTACTTCCTCTAACTCAATCTTTTCAAGGACAAATACAAATAGAAGAAGGTAAAAAG AAATATATCAAACATTGTATTTGCATTCCATTAGACCTTCCTCCAATGCCCTTATACCCA GATCAAATGAAAGAAAAGATAATTCCTCAATTGTTACTTAAAGATATACTTAAAAAGTAT GACGGTAAAACAGAGACACTTATTGGTAAACGTAGTGTAAAATATTTAATAAAAAAATTA CCAAAGTATTTAACATTTGTTATTAAACGGTTTGAGAGAAACACTTTTCAAGGAGATAAA AATATTACTGTCGTTGAATTTGAAGACACTTTAGATATGTCCGATTATGTAGTTAATGAT TCAATAAAACAACAGACTAATTATCATTTAGTGTCAGCAATAAAACATGATGGAGGTATT GAAGATGGAACATACTCTTCCTTTTTGTATCATCAGTCTTTAAAAAAGTGGTTTGAAATT AATAACGAAGAGGTTAAAGAAGCATTTTTCCCATTAATTAAAGTATCAGCAATATGTCTG TTAATATATGAACAAGACGAATAA
  • Download Fasta

  • Fasta :-

    MKRTTQNSNECQSKRAYCPYVETVDRNLIDFDKEKVCCKTLKTNQIYCCMICGKYYQGRD VGSPAYVHSLEENHHIFLSLNTKQFFNLPHGNEVIEPSFKDIINALDPVYTSNDISHLDD ENKVIQLKDHFNKKYIIGFIGFNNLGRTDSINCLVQSIGHCKEIRNLLLSYEEIEKISSK ARCGELIKRVSMLIRKQWNPTLIKSVISPYELMSELNRLKKSFSIEKQEDLIEFYMFFIN ALLPLTQSFQGQIQIEEGKKKYIKHCICIPLDLPPMPLYPDQMKEKIIPQLLLKDILKKY DGKTETLIGKRSVKYLIKKLPKYLTFVIKRFERNTFQGDKNITVVEFEDTLDMSDYVVND SIKQQTNYHLVSAIKHDGGIEDGTYSSFLYHQSLKKWFEINNEEVKEAFFPLIKVSAICL LIYEQDE

  • title: Active Site
  • coordinates: N144,D149,T384,N402
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
EDI_038430170 SNLLLSYEEI0.997unspEDI_038430170 SNLLLSYEEI0.997unspEDI_038430170 SNLLLSYEEI0.997unspEDI_038430208 SKSVISPYEL0.996unspEDI_038430224 SKKSFSIEKQ0.993unspEDI_03843098 SVIEPSFKDI0.991unspEDI_038430116 SSNDISHLDD0.993unsp

EDI_038430      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India