EDI_063900 | proteasome subunit beta type-1, putative

UniProt_ID: B0EQR0

Computed_GO_Component_IDs: GO:0005839
Computed_GO_Components: proteasome core complex
Computed_GO_Function_IDs: GO:0004298
Computed_GO_Functions: threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	EDI_063900	OTHER	0.999303	0.000534	0.000162

No Results

Fasta :-
>EDI_063900 MFTQQPVREAKSKDEWSPYEDNCGTCVVIKGEDFVVVASDTRMSRDYMILTRNDSKIYPL TSKCIFTGSGMRADMKELTDQIKAHIKNYKYENGKEMSTESVAQVLSNTLYSHRFFPYYS FSLLAGINSKGKAVTYNYDAVGSFEERKYSCSGSGEELAYPLLDSLLKDRTEPLGEQEAI NIARDVMTSACERDIHTGDNVEIVILNSKGIRKEVHFMASD
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_063900.fa Sequence name : EDI_063900 Sequence length : 221 VALUES OF COMPUTED PARAMETERS Coef20 : 3.207 CoefTot : -0.428 ChDiff : -6 ZoneTo : 8 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.588 1.288 0.074 0.405 MesoH : -0.918 -0.164 -0.479 0.095 MuHd_075 : 32.834 16.809 7.001 6.234 MuHd_095 : 13.954 8.467 4.295 3.829 MuHd_100 : 19.195 9.097 5.153 4.074 MuHd_105 : 22.277 9.885 5.640 4.339 Hmax_075 : 3.325 0.787 -2.797 1.759 Hmax_095 : 0.088 0.525 -1.743 1.776 Hmax_100 : -3.600 -2.200 -2.419 0.830 Hmax_105 : -3.500 -1.167 -3.104 0.460 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9718 0.0282 DFMC : 0.9697 0.0303

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 221 EDI_063900 MFTQQPVREAKSKDEWSPYEDNCGTCVVIKGEDFVVVASDTRMSRDYMILTRNDSKIYPLTSKCIFTGSGMRADMKELTD 80 QIKAHIKNYKYENGKEMSTESVAQVLSNTLYSHRFFPYYSFSLLAGINSKGKAVTYNYDAVGSFEERKYSCSGSGEELAY 160 PLLDSLLKDRTEPLGEQEAINIARDVMTSACERDIHTGDNVEIVILNSKGIRKEVHFMASD 240 ................................................................................ 80 ................................................................................ 160 ............................................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_063900 8 FTQQPVR|EA 0.090 . EDI_063900 11 QPVREAK|SK 0.306 . EDI_063900 13 VREAKSK|DE 0.074 . EDI_063900 30 GTCVVIK|GE 0.070 . EDI_063900 42 VVASDTR|MS 0.078 . EDI_063900 45 SDTRMSR|DY 0.262 . EDI_063900 52 DYMILTR|ND 0.089 . EDI_063900 56 LTRNDSK|IY 0.056 . EDI_063900 63 IYPLTSK|CI 0.066 . EDI_063900 72 FTGSGMR|AD 0.085 . EDI_063900 76 GMRADMK|EL 0.080 . EDI_063900 83 ELTDQIK|AH 0.061 . EDI_063900 87 QIKAHIK|NY 0.061 . EDI_063900 90 AHIKNYK|YE 0.081 . EDI_063900 95 YKYENGK|EM 0.065 . EDI_063900 114 NTLYSHR|FF 0.077 . EDI_063900 130 LAGINSK|GK 0.059 . EDI_063900 132 GINSKGK|AV 0.093 . EDI_063900 147 VGSFEER|KY 0.108 . EDI_063900 148 GSFEERK|YS 0.099 . EDI_063900 168 LLDSLLK|DR 0.060 . EDI_063900 170 DSLLKDR|TE 0.073 . EDI_063900 184 EAINIAR|DV 0.201 . EDI_063900 193 MTSACER|DI 0.185 . EDI_063900 209 IVILNSK|GI 0.067 . EDI_063900 212 LNSKGIR|KE 0.081 . EDI_063900 213 NSKGIRK|EV 0.108 . ____________________________^_________________

Fasta :-
>EDI_063900 ATGTTTACACAACAACCAGTAAGAGAAGCTAAAAGCAAAGATGAATGGAGTCCATATGAA GATAATTGTGGAACATGTGTTGTTATTAAAGGAGAAGATTTTGTTGTGGTTGCTAGTGAT ACACGTATGAGCAGAGACTATATGATATTAACAAGAAATGATTCCAAAATATACCCATTA ACATCTAAATGTATTTTTACTGGAAGTGGAATGAGAGCAGATATGAAAGAATTAACTGAT CAAATCAAAGCACATATTAAGAATTATAAATATGAAAATGGTAAAGAAATGTCAACAGAA TCAGTAGCACAAGTATTATCAAATACATTATATTCACATCGATTCTTCCCATATTATTCA TTTTCATTATTAGCTGGAATTAATAGTAAAGGGAAAGCAGTTACTTATAATTATGATGCA GTTGGATCATTTGAAGAAAGAAAGTATTCATGTAGTGGTAGTGGAGAAGAGTTAGCATAT CCATTACTTGATTCATTATTAAAAGATAGAACAGAACCATTAGGAGAGCAAGAAGCAATA AACATTGCAAGAGATGTGATGACTTCTGCTTGTGAAAGAGACATACATACTGGAGATAAT GTTGAAATAGTAATTCTTAATTCCAAAGGAATAAGAAAAGAAGTACATTTTATGGCTAGT GACTAA
Download Fasta

Fasta :-

MFTQQPVREAKSKDEWSPYEDNCGTCVVIKGEDFVVVASDTRMSRDYMILTRNDSKIYPL TSKCIFTGSGMRADMKELTDQIKAHIKNYKYENGKEMSTESVAQVLSNTLYSHRFFPYYS FSLLAGINSKGKAVTYNYDAVGSFEERKYSCSGSGEELAYPLLDSLLKDRTEPLGEQEAI NIARDVMTSACERDIHTGDNVEIVILNSKGIRKEVHFMASD

Proteasome subunits

title: active site
coordinates: G24,D40,R42,K56,S154,D194,T197,G198

	ID	Site	Position	Gscore	Iscore
	EDI_063900	T	3	0.602	0.194

	ID	Site	Position	Gscore	Iscore
	EDI_063900	T	3	0.602	0.194

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	EDI_063900	17 S	KDEWSPYED	0.991	unsp	EDI_063900	154 S	SCSGSGEEL	0.99	unsp

EDI_063900 | proteasome subunit beta type-1, putative

ID's

UniProt_ID: B0EQR0

GEO Functions

Computed_GO_Component_IDs: GO:0005839

Computed_GO_Components: proteasome core complex

Computed_GO_Function_IDs: GO:0004298

Computed_GO_Functions: threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

EDI_063900

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India