EDI_093370 | proteasome subunit alpha type-6-A, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_093370OTHER0.9996840.0002490.000067
No Results

  • Fasta :-

    >EDI_093370 MAGTGYDRQLTIFSPEGRLYQVEYALKATKCESLTTVGVCSGEAACIVTQKKLPDRLVDP STVTHLHRISKHVGCCMSGIYADGKVIAQRSQYYASKFQLDYGYEMPVSLVAKKTADFAQ MLTQHAYMRPFGVSSMFIGWDEVSGPQLWRSDPAGSVAAFRGCAAGEKEQEAFNNLEKKK ISNELTVDQVVCQALDCLQTVTSSEFKATDIEIAIVTKDNKLFHLLSQQEIEHYLVLASE KD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_093370.fa Sequence name : EDI_093370 Sequence length : 242 VALUES OF COMPUTED PARAMETERS Coef20 : 3.516 CoefTot : -0.516 ChDiff : -4 ZoneTo : 6 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.147 1.265 0.311 0.431 MesoH : -0.543 0.147 -0.371 0.157 MuHd_075 : 21.716 7.050 3.826 4.814 MuHd_095 : 18.461 10.115 3.547 4.743 MuHd_100 : 18.801 10.470 3.978 5.856 MuHd_105 : 16.130 8.699 3.570 5.782 Hmax_075 : 8.750 1.983 -0.001 2.975 Hmax_095 : 7.613 4.112 -0.374 3.439 Hmax_100 : 10.000 5.500 1.132 3.960 Hmax_105 : -0.117 1.750 -1.227 3.243 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9506 0.0494 DFMC : 0.9572 0.0428
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 242 EDI_093370 MAGTGYDRQLTIFSPEGRLYQVEYALKATKCESLTTVGVCSGEAACIVTQKKLPDRLVDPSTVTHLHRISKHVGCCMSGI 80 YADGKVIAQRSQYYASKFQLDYGYEMPVSLVAKKTADFAQMLTQHAYMRPFGVSSMFIGWDEVSGPQLWRSDPAGSVAAF 160 RGCAAGEKEQEAFNNLEKKKISNELTVDQVVCQALDCLQTVTSSEFKATDIEIAIVTKDNKLFHLLSQQEIEHYLVLASE 240 KD 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_093370 8 AGTGYDR|QL 0.072 . EDI_093370 18 IFSPEGR|LY 0.086 . EDI_093370 27 QVEYALK|AT 0.057 . EDI_093370 30 YALKATK|CE 0.058 . EDI_093370 51 ACIVTQK|KL 0.065 . EDI_093370 52 CIVTQKK|LP 0.081 . EDI_093370 56 QKKLPDR|LV 0.158 . EDI_093370 68 TVTHLHR|IS 0.110 . EDI_093370 71 HLHRISK|HV 0.310 . EDI_093370 85 GIYADGK|VI 0.062 . EDI_093370 90 GKVIAQR|SQ 0.118 . EDI_093370 97 SQYYASK|FQ 0.072 . EDI_093370 113 PVSLVAK|KT 0.079 . EDI_093370 114 VSLVAKK|TA 0.119 . EDI_093370 129 TQHAYMR|PF 0.118 . EDI_093370 150 SGPQLWR|SD 0.114 . EDI_093370 161 GSVAAFR|GC 0.146 . EDI_093370 168 GCAAGEK|EQ 0.061 . EDI_093370 178 AFNNLEK|KK 0.064 . EDI_093370 179 FNNLEKK|KI 0.154 . EDI_093370 180 NNLEKKK|IS 0.096 . EDI_093370 207 VTSSEFK|AT 0.081 . EDI_093370 218 EIAIVTK|DN 0.062 . EDI_093370 221 IVTKDNK|LF 0.053 . EDI_093370 241 LVLASEK|D- 0.068 . ____________________________^_________________

  • Fasta :-

    >EDI_093370 ATGGCTGGAACAGGATATGACCGTCAACTCACAATCTTCTCACCTGAAGGGAGATTATAT CAAGTCGAATATGCCTTAAAAGCAACTAAATGTGAAAGTTTAACAACGGTTGGTGTATGT AGTGGTGAAGCTGCATGTATTGTAACACAAAAGAAATTACCAGATAGATTAGTTGATCCA TCAACAGTAACTCATCTTCATCGTATTTCAAAACATGTTGGTTGTTGTATGTCAGGAATA TATGCGGATGGTAAAGTTATTGCTCAAAGGTCACAATATTATGCAAGTAAGTTCCAATTA GACTATGGATATGAAATGCCTGTATCATTAGTGGCAAAGAAAACGGCTGATTTTGCTCAA ATGTTAACACAACATGCATACATGAGACCTTTTGGTGTATCTTCAATGTTTATTGGATGG GATGAAGTTTCAGGACCTCAACTTTGGAGAAGTGATCCAGCAGGTTCTGTTGCTGCTTTT AGAGGATGTGCAGCAGGAGAAAAAGAGCAAGAAGCATTTAATAATTTAGAAAAGAAAAAG ATTAGTAATGAATTAACTGTTGACCAAGTTGTTTGTCAAGCATTGGACTGTTTGCAAACA GTTACTTCATCAGAATTTAAAGCTACTGACATTGAGATTGCAATTGTAACTAAAGATAAT AAACTTTTCCATTTACTTTCGCAACAAGAAATTGAGCACTATCTTGTTCTTGCATCAGAG AAGGATTAA
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  • Fasta :-

    MAGTGYDRQLTIFSPEGRLYQVEYALKATKCESLTTVGVCSGEAACIVTQKKLPDRLVDP STVTHLHRISKHVGCCMSGIYADGKVIAQRSQYYASKFQLDYGYEMPVSLVAKKTADFAQ MLTQHAYMRPFGVSSMFIGWDEVSGPQLWRSDPAGSVAAFRGCAAGEKEQEAFNNLEKKK ISNELTVDQVVCQALDCLQTVTSSEFKATDIEIAIVTKDNKLFHLLSQQEIEHYLVLASE KD

  • title: active site
  • coordinates: L34,Q50,K52,H65,E167
No Results
No Results
No Results

EDI_093370      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India