EDI_096250 | proteasome subunit alpha type-2-A, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_096250OTHER0.9998110.0001570.000033
No Results

  • Fasta :-

    >EDI_096250 MEGGENDYGFSLTTFSPSGKLVQIEYALNAISAGSTSVGIKAKDGIVLAVEKSLPPMYIS ESIQKINHLCDSVGMVSSGMGPDARVLVKKGRKEGQKYWLEYQEDINCSMMTRKLAYLMQ EYTQKGGVRPFGVSVLVAGFDGKVPRLYQVDPSGSFWTWKATALGKNMTSVKTFLEKRYH DDIELEDAIHTAILALKEGFEGEMNEHNIEIGICTKENGFKVLTPSEIRDYLDIAN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_096250.fa Sequence name : EDI_096250 Sequence length : 236 VALUES OF COMPUTED PARAMETERS Coef20 : 2.866 CoefTot : 0.000 ChDiff : -5 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.653 0.982 0.007 0.439 MesoH : -0.241 0.385 -0.295 0.240 MuHd_075 : 15.790 6.379 4.633 2.072 MuHd_095 : 12.822 9.991 4.642 2.624 MuHd_100 : 12.276 9.321 3.784 2.362 MuHd_105 : 8.916 5.421 2.302 1.400 Hmax_075 : 5.700 3.383 -0.096 3.185 Hmax_095 : 11.400 5.200 0.722 3.320 Hmax_100 : 11.400 5.200 0.722 3.320 Hmax_105 : 2.500 -0.200 -1.894 2.200 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9888 0.0112 DFMC : 0.9727 0.0273
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 236 EDI_096250 MEGGENDYGFSLTTFSPSGKLVQIEYALNAISAGSTSVGIKAKDGIVLAVEKSLPPMYISESIQKINHLCDSVGMVSSGM 80 GPDARVLVKKGRKEGQKYWLEYQEDINCSMMTRKLAYLMQEYTQKGGVRPFGVSVLVAGFDGKVPRLYQVDPSGSFWTWK 160 ATALGKNMTSVKTFLEKRYHDDIELEDAIHTAILALKEGFEGEMNEHNIEIGICTKENGFKVLTPSEIRDYLDIAN 240 ................................................................................ 80 ................................................................................ 160 ............................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_096250 20 TFSPSGK|LV 0.084 . EDI_096250 41 STSVGIK|AK 0.081 . EDI_096250 43 SVGIKAK|DG 0.075 . EDI_096250 52 IVLAVEK|SL 0.070 . EDI_096250 65 ISESIQK|IN 0.058 . EDI_096250 85 GMGPDAR|VL 0.100 . EDI_096250 89 DARVLVK|KG 0.064 . EDI_096250 90 ARVLVKK|GR 0.154 . EDI_096250 92 VLVKKGR|KE 0.118 . EDI_096250 93 LVKKGRK|EG 0.066 . EDI_096250 97 GRKEGQK|YW 0.075 . EDI_096250 113 NCSMMTR|KL 0.087 . EDI_096250 114 CSMMTRK|LA 0.093 . EDI_096250 125 MQEYTQK|GG 0.060 . EDI_096250 129 TQKGGVR|PF 0.109 . EDI_096250 143 VAGFDGK|VP 0.056 . EDI_096250 146 FDGKVPR|LY 0.096 . EDI_096250 160 GSFWTWK|AT 0.080 . EDI_096250 166 KATALGK|NM 0.059 . EDI_096250 172 KNMTSVK|TF 0.062 . EDI_096250 177 VKTFLEK|RY 0.062 . EDI_096250 178 KTFLEKR|YH 0.232 . EDI_096250 197 TAILALK|EG 0.073 . EDI_096250 216 EIGICTK|EN 0.065 . EDI_096250 221 TKENGFK|VL 0.069 . EDI_096250 229 LTPSEIR|DY 0.083 . ____________________________^_________________

  • Fasta :-

    >EDI_096250 ATGGAAGGAGGAGAAAATGATTATGGATTTTCATTAACAACATTCAGTCCCAGCGGAAAA TTAGTTCAAATTGAATATGCTCTTAATGCTATTTCTGCTGGTTCAACTAGTGTAGGTATT AAAGCTAAAGATGGAATTGTATTAGCAGTAGAAAAATCATTACCACCAATGTATATAAGT GAGTCAATACAAAAAATTAATCATTTATGTGATAGCGTTGGAATGGTAAGTAGTGGAATG GGACCTGATGCTCGAGTATTAGTAAAAAAAGGAAGAAAAGAAGGACAAAAGTATTGGTTA GAATATCAAGAAGATATAAATTGTTCAATGATGACAAGAAAGTTAGCATATTTAATGCAA GAATATACTCAAAAAGGAGGTGTTAGACCTTTTGGAGTTAGTGTATTAGTTGCAGGATTT GATGGTAAAGTACCACGTTTATACCAAGTTGATCCAAGTGGATCATTTTGGACTTGGAAA GCCACAGCACTTGGAAAGAATATGACATCAGTCAAGACATTCTTAGAAAAACGATATCAC GATGATATTGAATTAGAAGATGCTATTCATACTGCTATTTTAGCATTAAAAGAGGGATTT GAAGGAGAAATGAATGAACATAATATTGAAATTGGAATTTGTACAAAAGAAAATGGATTT AAAGTGTTAACTCCATCAGAAATCAGAGATTATTTGGATATTGCCAATTAA
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  • Fasta :-

    MEGGENDYGFSLTTFSPSGKLVQIEYALNAISAGSTSVGIKAKDGIVLAVEKSLPPMYIS ESIQKINHLCDSVGMVSSGMGPDARVLVKKGRKEGQKYWLEYQEDINCSMMTRKLAYLMQ EYTQKGGVRPFGVSVLVAGFDGKVPRLYQVDPSGSFWTWKATALGKNMTSVKTFLEKRYH DDIELEDAIHTAILALKEGFEGEMNEHNIEIGICTKENGFKVLTPSEIRDYLDIAN

  • title: active site
  • coordinates: S35,E51,S53,K65,K166
No Results
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No Results

EDI_096250      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India