EDI_110210 | 26S proteasome non-ATPase regulatory subunit, putative

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_IDPredictionOTHERSPmTPCS_Position
EDI_110210OTHER0.9999610.0000350.000004
No Results

  • Fasta :-

    >EDI_110210 MPEATIIVIDTSDYMRNGDYTPSRMEAQIEAVQSITSGRLRKNPENHVGFIAAGSESKRI LVTLTNDFGKILSGLHETKIGGSSDFKQALLVAKLALANRVDKIYTQRIILFVGSPLNIN SEEAQTMVNLLKKSNIALDIVSFGEVVDNAPVIELFPSQMGDDCTLVTIPAGPHILLDMI SKTNIIMRDGGLNTFDPEFDPEYAAAIRASMGDVNGGTEFYDEDAALRAAIAASLADYEN LQTTNVHESKKEEQKEITMEEEIEKAIKMSLEDNIKPNQSQEEKKDESDNKKMEEDKKNK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_110210.fa Sequence name : EDI_110210 Sequence length : 300 VALUES OF COMPUTED PARAMETERS Coef20 : 3.445 CoefTot : -0.253 ChDiff : -18 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.065 1.388 0.136 0.557 MesoH : -0.346 0.571 -0.316 0.302 MuHd_075 : 13.795 6.094 3.437 2.598 MuHd_095 : 19.474 11.002 4.898 2.621 MuHd_100 : 34.550 15.145 7.765 4.257 MuHd_105 : 42.919 15.327 9.096 5.366 Hmax_075 : 3.617 6.183 -0.665 3.453 Hmax_095 : 4.700 7.800 -0.270 3.450 Hmax_100 : 16.300 13.200 2.308 4.830 Hmax_105 : 14.100 10.412 1.786 4.454 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9459 0.0541 DFMC : 0.9341 0.0659
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 300 EDI_110210 MPEATIIVIDTSDYMRNGDYTPSRMEAQIEAVQSITSGRLRKNPENHVGFIAAGSESKRILVTLTNDFGKILSGLHETKI 80 GGSSDFKQALLVAKLALANRVDKIYTQRIILFVGSPLNINSEEAQTMVNLLKKSNIALDIVSFGEVVDNAPVIELFPSQM 160 GDDCTLVTIPAGPHILLDMISKTNIIMRDGGLNTFDPEFDPEYAAAIRASMGDVNGGTEFYDEDAALRAAIAASLADYEN 240 LQTTNVHESKKEEQKEITMEEEIEKAIKMSLEDNIKPNQSQEEKKDESDNKKMEEDKKNK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................................ 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_110210 16 DTSDYMR|NG 0.081 . EDI_110210 24 GDYTPSR|ME 0.129 . EDI_110210 39 QSITSGR|LR 0.091 . EDI_110210 41 ITSGRLR|KN 0.090 . EDI_110210 42 TSGRLRK|NP 0.247 . EDI_110210 58 AAGSESK|RI 0.058 . EDI_110210 59 AGSESKR|IL 0.225 . EDI_110210 70 LTNDFGK|IL 0.079 . EDI_110210 79 SGLHETK|IG 0.065 . EDI_110210 87 GGSSDFK|QA 0.066 . EDI_110210 94 QALLVAK|LA 0.067 . EDI_110210 100 KLALANR|VD 0.072 . EDI_110210 103 LANRVDK|IY 0.146 . EDI_110210 108 DKIYTQR|II 0.085 . EDI_110210 132 TMVNLLK|KS 0.073 . EDI_110210 133 MVNLLKK|SN 0.139 . EDI_110210 182 LLDMISK|TN 0.064 . EDI_110210 188 KTNIIMR|DG 0.137 . EDI_110210 208 EYAAAIR|AS 0.083 . EDI_110210 228 DEDAALR|AA 0.080 . EDI_110210 250 TNVHESK|KE 0.089 . EDI_110210 251 NVHESKK|EE 0.119 . EDI_110210 255 SKKEEQK|EI 0.078 . EDI_110210 265 MEEEIEK|AI 0.067 . EDI_110210 268 EIEKAIK|MS 0.056 . EDI_110210 276 SLEDNIK|PN 0.064 . EDI_110210 284 NQSQEEK|KD 0.064 . EDI_110210 285 QSQEEKK|DE 0.195 . EDI_110210 291 KDESDNK|KM 0.062 . EDI_110210 292 DESDNKK|ME 0.123 . EDI_110210 297 KKMEEDK|KN 0.064 . EDI_110210 298 KMEEDKK|NK 0.090 . EDI_110210 300 EEDKKNK|-- 0.065 . ____________________________^_________________

  • Fasta :-

    >EDI_110210 ATGCCAGAAGCAACGATTATTGTTATAGATACATCGGATTATATGAGAAATGGAGATTAT ACCCCAAGTCGAATGGAAGCACAGATTGAAGCAGTTCAATCAATTACTTCAGGAAGACTA AGAAAAAATCCAGAAAATCATGTTGGTTTTATTGCTGCTGGAAGTGAATCAAAGAGAATA CTTGTTACTCTTACAAATGACTTTGGAAAAATTTTAAGTGGATTACATGAAACTAAAATT GGTGGTTCAAGTGATTTTAAACAAGCATTATTAGTAGCTAAATTAGCACTTGCTAATAGA GTTGACAAAATATATACACAAAGAATCATTTTATTTGTTGGATCACCTTTAAATATTAAT TCAGAAGAAGCACAAACAATGGTTAATTTATTAAAGAAAAGTAATATTGCATTAGATATT GTTTCATTTGGAGAGGTTGTTGATAATGCACCAGTTATTGAACTATTTCCATCTCAAATG GGAGATGATTGTACTTTAGTAACAATTCCAGCAGGGCCACATATTTTACTTGATATGATT TCTAAAACTAATATTATTATGAGAGATGGCGGATTAAATACATTTGATCCAGAATTTGAT CCAGAGTATGCTGCTGCTATTCGTGCATCAATGGGAGATGTTAATGGTGGAACAGAGTTC TATGATGAAGATGCAGCATTGAGAGCTGCTATTGCAGCATCATTAGCAGATTATGAAAAT TTACAAACAACAAATGTTCATGAATCAAAAAAAGAAGAACAGAAAGAAATAACAATGGAA GAAGAAATTGAAAAAGCAATTAAAATGTCATTAGAAGATAATATTAAACCTAATCAATCT CAAGAAGAAAAGAAAGATGAAAGTGATAATAAAAAAATGGAAGAAGATAAAAAAAATAAA TAA
  • Download Fasta

  • Fasta :-

    MPEATIIVIDTSDYMRNGDYTPSRMEAQIEAVQSITSGRLRKNPENHVGFIAAGSESKRI LVTLTNDFGKILSGLHETKIGGSSDFKQALLVAKLALANRVDKIYTQRIILFVGSPLNIN SEEAQTMVNLLKKSNIALDIVSFGEVVDNAPVIELFPSQMGDDCTLVTIPAGPHILLDMI SKTNIIMRDGGLNTFDPEFDPEYAAAIRASMGDVNGGTEFYDEDAALRAAIAASLADYEN LQTTNVHESKKEEQKEITMEEEIEKAIKMSLEDNIKPNQSQEEKKDESDNKKMEEDKKNK

  • title: metal ion-dependent adhesion site (MIDAS)
  • coordinates: D10,S84,G114
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
EDI_110210280 SKPNQSQEEK0.996unspEDI_110210280 SKPNQSQEEK0.996unspEDI_110210280 SKPNQSQEEK0.996unspEDI_110210249 SNVHESKKEE0.997unspEDI_110210270 SAIKMSLEDN0.996unsp

EDI_110210      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India