EDI_110700 | hypothetical protein

UniProt_ID: B0EK50

Computed_GO_Component_IDs: GO:0005643
Computed_GO_Components: nuclear pore
Computed_GO_Function_IDs: GO:0017056
Computed_GO_Functions: structural constituent of nuclear pore
Computed_GO_Process_IDs: GO:0006913
Computed_GO_Processes: nucleocytoplasmic transport
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	EDI_110700	OTHER	0.999539	0.000084	0.000377

No Results

Fasta :-
>EDI_110700 MQNLNQNTSLTSGTNSSIPSLSTNAFPSLTSNGGLGNSTNLFSTSISSGLGTTTGLGNTN SLFSNSLNTGFGTNTTTGLGTTNSLFSNTFNTGLGNSTTGNNNPILLNPLSISSLPIGTN ASKDKQSKEKSWVYHDQTSMNQPDFVRPEEMMFNTSCCIIDPKVIDKILFDAEREIEALQ PNISYDIKPIGLKQGYVCNPSMQTLKAMSIEQLKNVSSFEVSRPGYGKVMWSNVDLTNVN LDISIIIERGYCDVYPDGIQKPRFGEKLNKEATIVLENVVDTLEEFRKLLPRLSKKVDIK SYEENTKTVTFVVPHFTRYSVIDEDNNTQENEEEVIDYEKHQTISNNNPEWKFPVVVLHK IEFSPFEIDI
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_110700.fa Sequence name : EDI_110700 Sequence length : 370 VALUES OF COMPUTED PARAMETERS Coef20 : 3.878 CoefTot : -3.704 ChDiff : -12 ZoneTo : 123 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.553 0.988 0.182 0.458 MesoH : 0.610 0.017 -0.163 0.214 MuHd_075 : 22.663 20.470 7.632 6.116 MuHd_095 : 21.958 19.741 7.303 5.649 MuHd_100 : 19.624 17.389 6.659 5.102 MuHd_105 : 18.225 15.539 5.471 4.450 Hmax_075 : 15.050 12.250 1.945 4.410 Hmax_095 : 13.387 15.200 2.650 4.961 Hmax_100 : 14.700 13.000 3.148 4.250 Hmax_105 : 13.300 13.000 1.661 3.600 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8363 0.1637 DFMC : 0.3214 0.6786 This protein is probably imported in chloroplast. f(Ser) = 0.1870 f(Arg) = 0.0000 CMi = 2.67131 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 370 EDI_110700 MQNLNQNTSLTSGTNSSIPSLSTNAFPSLTSNGGLGNSTNLFSTSISSGLGTTTGLGNTNSLFSNSLNTGFGTNTTTGLG 80 TTNSLFSNTFNTGLGNSTTGNNNPILLNPLSISSLPIGTNASKDKQSKEKSWVYHDQTSMNQPDFVRPEEMMFNTSCCII 160 DPKVIDKILFDAEREIEALQPNISYDIKPIGLKQGYVCNPSMQTLKAMSIEQLKNVSSFEVSRPGYGKVMWSNVDLTNVN 240 LDISIIIERGYCDVYPDGIQKPRFGEKLNKEATIVLENVVDTLEEFRKLLPRLSKKVDIKSYEENTKTVTFVVPHFTRYS 320 VIDEDNNTQENEEEVIDYEKHQTISNNNPEWKFPVVVLHKIEFSPFEIDI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_110700 123 IGTNASK|DK 0.069 . EDI_110700 125 TNASKDK|QS 0.075 . EDI_110700 128 SKDKQSK|EK 0.080 . EDI_110700 130 DKQSKEK|SW 0.093 . EDI_110700 147 NQPDFVR|PE 0.089 . EDI_110700 163 CCIIDPK|VI 0.075 . EDI_110700 167 DPKVIDK|IL 0.080 . EDI_110700 174 ILFDAER|EI 0.107 . EDI_110700 188 NISYDIK|PI 0.084 . EDI_110700 193 IKPIGLK|QG 0.059 . EDI_110700 206 PSMQTLK|AM 0.066 . EDI_110700 214 MSIEQLK|NV 0.083 . EDI_110700 223 SSFEVSR|PG 0.094 . EDI_110700 228 SRPGYGK|VM 0.062 . EDI_110700 249 ISIIIER|GY 0.111 . EDI_110700 261 YPDGIQK|PR 0.057 . EDI_110700 263 DGIQKPR|FG 0.107 . EDI_110700 267 KPRFGEK|LN 0.067 . EDI_110700 270 FGEKLNK|EA 0.076 . EDI_110700 287 DTLEEFR|KL 0.067 . EDI_110700 288 TLEEFRK|LL 0.072 . EDI_110700 292 FRKLLPR|LS 0.087 . EDI_110700 295 LLPRLSK|KV 0.157 . EDI_110700 296 LPRLSKK|VD 0.111 . EDI_110700 300 SKKVDIK|SY 0.110 . EDI_110700 307 SYEENTK|TV 0.080 . EDI_110700 318 VVPHFTR|YS 0.087 . EDI_110700 340 EVIDYEK|HQ 0.058 . EDI_110700 352 NNNPEWK|FP 0.080 . EDI_110700 360 PVVVLHK|IE 0.054 . ____________________________^_________________

Fasta :-
>EDI_110700 ATGCAAAATTTAAATCAAAATACCTCTTTAACATCTGGAACAAATAGTAGTATACCCAGT CTTTCAACTAATGCTTTTCCTTCGTTAACTTCAAATGGAGGTCTTGGGAATTCTACTAAT CTTTTTTCTACTTCAATAAGTAGTGGATTAGGTACAACGACAGGACTTGGTAATACTAAT AGTCTTTTCTCAAATTCACTTAATACTGGGTTTGGAACAAACACAACTACAGGACTTGGA ACTACTAATAGCCTTTTTTCAAATACATTTAATACTGGACTTGGAAATTCAACAACAGGA AATAATAACCCAATACTGTTAAACCCTCTTTCTATTTCATCTTTACCAATTGGAACTAAT GCTTCAAAAGATAAACAAAGTAAAGAAAAGTCATGGGTATACCATGACCAAACATCAATG AATCAACCTGACTTTGTAAGACCAGAAGAAATGATGTTTAATACTTCATGTTGTATAATT GATCCAAAAGTTATTGACAAAATATTATTTGATGCTGAAAGAGAAATTGAAGCATTACAA CCAAATATTTCATATGACATTAAACCAATAGGATTAAAACAAGGATATGTATGTAATCCT TCAATGCAAACATTAAAAGCTATGTCAATCGAACAACTTAAAAATGTTTCTTCATTTGAA GTTTCACGACCAGGTTATGGTAAGGTTATGTGGTCAAACGTTGATTTAACAAATGTTAAT TTAGATATATCTATTATTATAGAACGAGGATATTGTGATGTTTATCCAGATGGAATTCAA AAACCTCGATTTGGAGAGAAATTAAATAAAGAAGCTACTATTGTTTTAGAGAATGTTGTT GATACATTAGAAGAATTTAGAAAACTTCTTCCTCGTTTAAGTAAGAAAGTAGATATTAAA AGTTATGAAGAAAATACTAAAACTGTTACATTTGTTGTTCCTCATTTTACACGATATTCT GTTATTGATGAAGATAATAACACACAAGAGAATGAAGAAGAAGTTATTGATTATGAAAAA CATCAGACCATATCAAACAATAATCCTGAATGGAAATTTCCTGTAGTTGTTCTTCATAAG ATTGAATTCAGTCCATTTGAGATTGATATATAA
Download Fasta

Fasta :-

MQNLNQNTSLTSGTNSSIPSLSTNAFPSLTSNGGLGNSTNLFSTSISSGLGTTTGLGNTN SLFSNSLNTGFGTNTTTGLGTTNSLFSNTFNTGLGNSTTGNNNPILLNPLSISSLPIGTN ASKDKQSKEKSWVYHDQTSMNQPDFVRPEEMMFNTSCCIIDPKVIDKILFDAEREIEALQ PNISYDIKPIGLKQGYVCNPSMQTLKAMSIEQLKNVSSFEVSRPGYGKVMWSNVDLTNVN LDISIIIERGYCDVYPDGIQKPRFGEKLNKEATIVLENVVDTLEEFRKLLPRLSKKVDIK SYEENTKTVTFVVPHFTRYSVIDEDNNTQENEEEVIDYEKHQTISNNNPEWKFPVVVLHK IEFSPFEIDI

C-terminal autoproteolytic domain of nucleoporin nup98

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	EDI_110700	T	23	0.535	0.108	EDI_110700	T	8	0.502	0.026

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	EDI_110700	T	23	0.535	0.108	EDI_110700	T	8	0.502	0.026

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	EDI_110700	320 S	FTRYSVIDE	0.994	unsp	EDI_110700	320 S	FTRYSVIDE	0.994	unsp	EDI_110700	320 S	FTRYSVIDE	0.994	unsp	EDI_110700	209 S	LKAMSIEQL	0.995	unsp	EDI_110700	301 S	VDIKSYEEN	0.997	unsp

EDI_110700 | hypothetical protein

ID's

UniProt_ID: B0EK50

GEO Functions

Computed_GO_Component_IDs: GO:0005643

Computed_GO_Components: nuclear pore

Computed_GO_Function_IDs: GO:0017056

Computed_GO_Functions: structural constituent of nuclear pore

Computed_GO_Process_IDs: GO:0006913

Computed_GO_Processes: nucleocytoplasmic transport

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

C-terminal autoproteolytic domain of nucleoporin nup98

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

EDI_110700

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India