EDI_121940 | signal peptidase complex catalytic subunit SEC11A, putative

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

  • Computed_GO_Function_IDs:  GO:0008233      

  • Computed_GO_Functions:  peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006465      

  • Computed_GO_Processes:  signal peptide processing      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
EDI_121940OTHER0.7456180.0027920.251590
No Results

  • Fasta :-

    >EDI_121940 MFAPIQSLRSMSPRLIIQNIAQFGLIVASAVIMWKTLCVLFVTEAPIVVILSGSMEPGFK RGDLMFLTNRGGVDNIQIGDIIVYNLPSKGIPIIHRVIEIHKDTKGDVRFLTKGDNNPVD DRGLYEGPLWLKPHQIIGKSYAHVPYVGMITIALTDYPLLKWTVIGLLLISVLLNKDQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_121940.fa Sequence name : EDI_121940 Sequence length : 178 VALUES OF COMPUTED PARAMETERS Coef20 : 4.509 CoefTot : 0.424 ChDiff : 3 ZoneTo : 43 KR : 3 DE : 0 CleavSite : 11 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.741 2.229 0.368 0.728 MesoH : 0.158 0.940 -0.155 0.393 MuHd_075 : 41.636 31.177 11.319 10.249 MuHd_095 : 26.747 22.805 8.267 7.675 MuHd_100 : 24.714 22.074 7.817 7.493 MuHd_105 : 20.677 17.250 6.026 5.722 Hmax_075 : 19.900 24.800 4.562 7.660 Hmax_095 : 17.700 16.800 4.782 7.500 Hmax_100 : 19.200 24.300 4.942 8.080 Hmax_105 : 19.400 26.017 5.049 5.653 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1114 0.8886 DFMC : 0.1670 0.8330 This protein is probably imported in mitochondria. f(Ser) = 0.0930 f(Arg) = 0.0465 CMi = 0.68847 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 178 EDI_121940 MFAPIQSLRSMSPRLIIQNIAQFGLIVASAVIMWKTLCVLFVTEAPIVVILSGSMEPGFKRGDLMFLTNRGGVDNIQIGD 80 IIVYNLPSKGIPIIHRVIEIHKDTKGDVRFLTKGDNNPVDDRGLYEGPLWLKPHQIIGKSYAHVPYVGMITIALTDYPLL 160 KWTVIGLLLISVLLNKDQ 240 ................................................................................ 80 ................................................................................ 160 .................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_121940 9 APIQSLR|SM 0.145 . EDI_121940 14 LRSMSPR|LI 0.225 . EDI_121940 35 SAVIMWK|TL 0.066 . EDI_121940 60 SMEPGFK|RG 0.056 . EDI_121940 61 MEPGFKR|GD 0.149 . EDI_121940 70 LMFLTNR|GG 0.075 . EDI_121940 89 VYNLPSK|GI 0.071 . EDI_121940 96 GIPIIHR|VI 0.101 . EDI_121940 102 RVIEIHK|DT 0.066 . EDI_121940 105 EIHKDTK|GD 0.062 . EDI_121940 109 DTKGDVR|FL 0.109 . EDI_121940 113 DVRFLTK|GD 0.061 . EDI_121940 122 NNPVDDR|GL 0.099 . EDI_121940 132 EGPLWLK|PH 0.058 . EDI_121940 139 PHQIIGK|SY 0.082 . EDI_121940 161 TDYPLLK|WT 0.073 . EDI_121940 176 ISVLLNK|DQ 0.066 . ____________________________^_________________

  • Fasta :-

    >EDI_121940 ATGTTTGCTCCTATTCAATCTCTTAGGTCTATGAGCCCTAGATTAATTATTCAAAATATT GCTCAATTTGGATTAATTGTTGCATCAGCTGTAATAATGTGGAAAACACTTTGTGTTTTA TTTGTTACAGAAGCACCAATTGTTGTTATATTAAGTGGTTCTATGGAACCAGGATTTAAA CGAGGTGATTTAATGTTTTTAACAAATAGAGGTGGAGTTGATAATATTCAAATAGGTGAT ATTATTGTTTATAATTTACCATCTAAAGGAATTCCAATCATTCATAGAGTAATAGAAATT CATAAAGATACTAAAGGTGATGTTCGTTTTTTGACTAAAGGAGATAATAATCCAGTTGAT GATAGAGGATTATATGAAGGTCCTTTATGGTTAAAACCACATCAAATTATTGGAAAATCT TATGCTCATGTTCCATATGTAGGAATGATTACAATTGCATTAACTGATTATCCACTTCTT AAATGGACAGTTATTGGGTTATTATTAATCAGTGTTTTATTAAACAAAGATCAATAA
  • Download Fasta

  • Fasta :-

    MFAPIQSLRSMSPRLIIQNIAQFGLIVASAVIMWKTLCVLFVTEAPIVVILSGSMEPGFK RGDLMFLTNRGGVDNIQIGDIIVYNLPSKGIPIIHRVIEIHKDTKGDVRFLTKGDNNPVD DRGLYEGPLWLKPHQIIGKSYAHVPYVGMITIALTDYPLLKWTVIGLLLISVLLNKDQ

  • title: Catalytic site
  • coordinates: S54,H95
No Results
No Results
IDSitePeptideScoreMethod
EDI_12194012 SLRSMSPRLI0.994unsp

EDI_121940      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India