EDI_158600 | presenilin hop-1, putative

_IDPredictionOTHERSPmTPCS_Position
EDI_158600OTHER0.9995980.0001460.000256
No Results

  • Fasta :-

    >EDI_158600 MLFGGSIMKSLLSVFNWPIDWISFAFLLFNFGILGVVSIFYISPMKLNQFYMIIISVFMA SFFTNLPEWTTWTLLIGMACYDLVAVLCPKGPLRILVNLAQERNEPIPALVYSTAVWMGL ASPDDSKNEIINVDSNPFTLSSTHGKGVKLGLGDFVFYSVLVGRCAMYDLTIVFSGSVAV LSGLFGTLILLVVFNKALPALPISIFFGTLIYCVSRWAIVPLVTTANLYGYVA
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/EDI_158600.fa Sequence name : EDI_158600 Sequence length : 233 VALUES OF COMPUTED PARAMETERS Coef20 : 3.989 CoefTot : -1.698 ChDiff : 0 ZoneTo : 101 KR : 4 DE : 3 CleavSite : 104 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.371 2.671 0.483 0.885 MesoH : 1.263 1.568 0.171 0.589 MuHd_075 : 22.997 20.097 8.314 4.802 MuHd_095 : 34.684 28.840 10.783 7.838 MuHd_100 : 32.962 28.013 9.903 8.513 MuHd_105 : 29.422 22.268 8.477 7.397 Hmax_075 : 16.300 17.967 4.616 4.100 Hmax_095 : 14.788 25.800 4.453 7.455 Hmax_100 : 19.500 20.500 3.648 7.260 Hmax_105 : 16.538 14.438 3.960 6.116 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9443 0.0557 DFMC : 0.8878 0.1122
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 233 EDI_158600 MLFGGSIMKSLLSVFNWPIDWISFAFLLFNFGILGVVSIFYISPMKLNQFYMIIISVFMASFFTNLPEWTTWTLLIGMAC 80 YDLVAVLCPKGPLRILVNLAQERNEPIPALVYSTAVWMGLASPDDSKNEIINVDSNPFTLSSTHGKGVKLGLGDFVFYSV 160 LVGRCAMYDLTIVFSGSVAVLSGLFGTLILLVVFNKALPALPISIFFGTLIYCVSRWAIVPLVTTANLYGYVA 240 ................................................................................ 80 ................................................................................ 160 ......................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ EDI_158600 9 FGGSIMK|SL 0.075 . EDI_158600 46 FYISPMK|LN 0.055 . EDI_158600 90 VAVLCPK|GP 0.060 . EDI_158600 94 CPKGPLR|IL 0.076 . EDI_158600 103 VNLAQER|NE 0.063 . EDI_158600 127 ASPDDSK|NE 0.057 . EDI_158600 146 LSSTHGK|GV 0.153 . EDI_158600 149 THGKGVK|LG 0.056 . EDI_158600 164 YSVLVGR|CA 0.109 . EDI_158600 196 LLVVFNK|AL 0.066 . EDI_158600 216 LIYCVSR|WA 0.107 . ____________________________^_________________

  • Fasta :-

    >EDI_158600 ATGTTATTTGGGGGGTCAATTATGAAAAGTTTATTATCAGTATTTAATTGGCCTATTGAT TGGATTTCATTTGCTTTTCTTCTTTTTAATTTTGGTATTCTTGGAGTTGTCTCAATTTTT TATATTTCTCCAATGAAATTGAACCAGTTTTATATGATTATTATCAGCGTTTTCATGGCT TCTTTCTTTACAAATCTCCCTGAATGGACTACATGGACTTTACTTATTGGAATGGCATGT TATGATTTAGTTGCTGTATTATGTCCTAAAGGACCATTAAGAATTCTTGTTAATTTAGCT CAAGAACGAAATGAACCAATTCCAGCACTTGTTTATTCTACAGCAGTATGGATGGGGTTG GCGTCTCCAGATGATTCTAAGAATGAAATTATAAATGTTGATTCAAACCCATTCACTCTA TCATCTACACATGGAAAAGGAGTAAAGTTAGGCTTAGGTGATTTTGTGTTCTATAGTGTG TTAGTTGGAAGGTGTGCAATGTACGACTTGACAATTGTATTTAGTGGATCAGTTGCAGTA TTATCTGGATTATTTGGTACTCTCATTTTATTGGTTGTTTTTAATAAAGCTCTTCCTGCT TTACCAATTTCTATTTTCTTTGGTACTTTAATCTATTGTGTATCAAGATGGGCAATAGTT CCATTAGTTACAACTGCTAATTTATATGGTTATGTGGCTTAA
  • Download Fasta

  • Fasta :-

    MLFGGSIMKSLLSVFNWPIDWISFAFLLFNFGILGVVSIFYISPMKLNQFYMIIISVFMA SFFTNLPEWTTWTLLIGMACYDLVAVLCPKGPLRILVNLAQERNEPIPALVYSTAVWMGL ASPDDSKNEIINVDSNPFTLSSTHGKGVKLGLGDFVFYSVLVGRCAMYDLTIVFSGSVAV LSGLFGTLILLVVFNKALPALPISIFFGTLIYCVSRWAIVPLVTTANLYGYVA

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EDI_158600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India